Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_03535	PS417_03540	PS417_03545	PS417_03550	PS417_03555
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.1	+0.2	-1.2	+0.1
soil	soil sample 5; outgrowth in LB	-0.3	+0.2	+0.2	-1.2	-0.0
stress	Paraquat dichloride 0.008 mg/ml	+0.2	+0.1	+0.0	-1.3	-0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.6	+0.0	+0.2	-0.6	+0.2
carbon source	L-Valine (C)	-0.4	-0.2	+0.5	-1.0	+0.4
motility	inner cut, LB soft agar motility assay	+0.3	+0.1	+0.2	-0.9	-0.2
motility	outer cut, LB soft agar motility assay	+0.3	+0.1	+0.2	-0.9	-0.1
phage	P. simiae OR Antrim MOI 1	+0.4	+0.2	-0.3	-0.9	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.3	-0.0	-0.8	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	+0.2	+0.2	-1.1	-0.1
phage	Wcs_0.1	+0.4	+0.3	+0.1	-0.9	-0.1
motility	outer cut, LB soft agar motility assay	+0.6	+0.2	+0.0	-0.6	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.3	+0.5	-0.5	+0.2
motility	inner cut, LB soft agar motility assay	+0.4	+0.3	+0.4	-0.8	-0.1
phage	P. simiae ORA MOI 0.1	+0.6	+0.3	-0.2	-0.6	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.0	-0.4	+0.8	+0.3
seeds	Growth on radish seeds for 72 hours	-0.2	+0.5	+0.2	+0.9	-0.5
soil	soil sample 3; outgrowth in LB	+0.8	+0.1	+0.3	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.3	-0.3	+0.3	-0.0
phage	P. simiae OR Antrim MOI 10	-0.3	+0.4	+0.1	+0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.1	+0.2	+0.9	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	-0.1	+0.9	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	+0.7	+0.3	+0.5	-0.1
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.2	+0.3	-0.2	+0.9	+0.0
seeds	Growth on radish seeds for 24 hours	+0.7	+0.4	+0.3	-0.1	+0.2
nitrogen source	Putrescine (N)	+0.3	+0.0	+0.1	+1.1	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.1	+0.6	+0.5	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.6	+0.7	+0.5	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	+0.2	+1.3	+0.1
stress	LB_noSalt with Chloride 1100 mM	+0.3	+0.3	+0.4	+0.6	+0.3