Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6959 and GFF6960 are separated by 34 nucleotidesGFF6960 and GFF6961 are separated by 15 nucleotidesGFF6961 and GFF6962 are separated by 13 nucleotidesGFF6962 and GFF6963 are separated by 24 nucleotides GFF6959 - Putative analog of CcoH, COG3198, at 33,489 to 33,770 GFF6959 GFF6960 - Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation, at 33,805 to 35,232 GFF6960 GFF6961 - Cytochrome c oxidase (cbb3-type) subunit CcoP (EC 1.9.3.1), at 35,248 to 36,165 GFF6961 GFF6962 - Cytochrome c oxidase (cbb3-type) subunit CcoQ (EC 1.9.3.1), at 36,179 to 36,319 GFF6962 GFF6963 - Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1), at 36,344 to 36,973 GFF6963
Group Condition GFF6959 GFF6960 GFF6961 GFF6962 GFF6963
complex community Community=arabino-guar; Passage=4 -1.2 +0.5 -0.3 N.D. -1.2
complex community Community=guar; Passage=4 -0.7 -0.2 +0.7 N.D. -1.7
complex community Community=Kojac gum; Passage=4 -0.9 +0.2 -0.5 N.D. -0.6
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -1.6 +0.0 -0.4 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 +0.0 -0.7 N.D. -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.5 +0.0 N.D. -0.4
phage phage_bap4 -0.2 -0.0 +0.1 N.D. -1.0
complex community Community=arabino-guar; Passage=4 +1.1 -0.0 -1.1 N.D. -1.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.8 -0.2 +0.1 N.D. +0.2
no phage control no phage control +0.6 -0.1 -0.2 N.D. -0.8
complex community Community=guar; Passage=4 -1.2 +0.0 +0.3 N.D. +0.4
complex community Community=Locust bean gum; Passage=4 +0.2 -0.5 +0.2 N.D. -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.7 -0.1 -0.7 N.D. -0.0
phage phage_bap4 +0.8 -0.1 -0.5 N.D. -0.4
complex community Community=guar; Passage=4 -1.0 +0.1 +0.3 N.D. +0.7
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.8 -0.6 +0.1 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.7 +0.0 -0.0 N.D. -0.6
phage phage_bap4 +0.7 +0.1 +0.2 N.D. -0.8
complex community Community=arabino-guar; Passage=4 +0.2 -0.0 -0.7 N.D. +0.7
phage phage_bap4 +0.5 +0.1 +0.2 N.D. -0.6
vitamin M9 with Supernatant from Cyptococcus +0.4 -0.4 +0.4 N.D. -0.0
no phage control no phage control +0.7 +0.1 +0.1 N.D. -0.4
phage phage_bap4 +1.2 +0.1 +0.1 N.D. -1.0
complex community Community=guar; Passage=4 +0.0 +0.5 -0.7 N.D. +0.9
no phage control no phage control +0.7 +0.1 +0.3 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.3 +0.3 N.D. +0.5
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.2 +0.5 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.4 -0.2 +0.3 N.D. +0.4
complex community Community=arabino-guar; Passage=4 +1.1 -0.2 +0.1 N.D. +0.3
complex community Community=Locust bean gum; Passage=4 +1.7 -0.7 +0.7 N.D. +0.8
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