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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF6949 and GFF6950 are separated by 1 nucleotides
GFF6950 and GFF6951 are separated by 99 nucleotides
GFF6951 and GFF6952 are separated by 21 nucleotides
GFF6952 and GFF6953 are separated by 7 nucleotides
GFF6949 - no description, at 25,666 to 26,319
GFF6949
GFF6950 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 26,321 to 27,040
GFF6950
GFF6951 - Alcohol dehydrogenase (EC 1.1.1.1), at 27,140 to 28,129
GFF6951
GFF6952 - Metallo-beta-lactamase family protein, RNA-specific, at 28,151 to 29,503
GFF6952
GFF6953 - Universal stress protein UspA and related nucleotide-binding proteins, at 29,511 to 30,335
GFF6953
Group
Condition
GFF6949
GFF6950
GFF6951
GFF6952
GFF6953
complex community
Community=arabino-guar; Passage=4
-3.8
-0.6
-0.2
+0.0
+0.5
complex community
Community=guar; Passage=4
-0.8
-0.7
-1.2
-0.1
+0.2
complex community
Community=arabino-guar; Passage=4
+0.0
-1.6
-0.1
-0.4
-0.4
complex community
Community=guar; Passage=4
-0.6
-1.4
-0.4
-0.1
+0.1
complex community
Community=Kojac gum; Passage=4
-2.1
+0.8
+0.0
-0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.6
-0.1
-0.0
-0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
-0.5
+0.3
-0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.7
+0.1
-0.3
-0.2
phage
phage_bap4
-1.1
-0.3
+0.2
+0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.9
-0.0
-0.1
-0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.8
+0.5
-0.4
+0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
+0.3
-0.2
-0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.6
-0.3
-0.1
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.6
+0.2
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.4
-0.7
-0.2
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.5
-0.8
+0.2
-0.1
-0.1
phage
phage_bap4
-0.5
-0.1
-0.1
-0.1
+0.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
-0.3
+0.1
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.5
+0.2
-0.4
-0.1
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.3
-0.5
-0.2
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.5
+0.5
-0.1
+0.3
-0.1
phage
phage_bap4
+0.6
-0.5
+0.0
-0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.6
-0.2
-0.2
-0.1
+0.2
complex community
Community=Locust bean gum; Passage=4
+0.3
+1.3
-0.6
-0.4
-0.2
complex community
Community=Locust bean gum; Passage=1
+0.3
+0.5
-0.2
-0.0
-0.2
complex community
Community=arabino-guar; Passage=4
+1.4
-0.2
+0.1
-0.1
-0.6
complex community
Community=arabino-guar; Passage=4
+1.7
+0.3
-0.6
-0.6
+0.3
complex community
Community=guar; Passage=4
+0.4
+1.0
-0.0
-0.3
+0.0
complex community
Community=guar; Passage=4
+1.1
+0.7
-0.5
-0.2
+0.3
complex community
Community=Locust bean gum; Passage=4
+0.2
+1.2
-0.5
-0.0
+0.6
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