Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03525	PS417_03530	PS417_03535	PS417_03540	PS417_03545
carbon source	2'-Deoxyinosine 5 mM (C)	-2.2	+0.2	-0.7	-0.1	-0.1
soil	soil sample 8; outgrowth in LB	-1.7	-0.4	-0.1	+0.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.3	-0.3	-0.3	+0.0	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.9	+0.1	-0.1	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	-0.3	-0.0	+0.1	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-1.4	-0.1	-0.2	+0.2	-0.3
stress	Gentamicin 0.008 mg/ml	-1.1	-0.5	+0.1	+0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.8	-0.0	-0.1	+0.2	+0.2
phage	JP1 MOI 10	-1.5	-0.2	-0.0	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	+0.0	+0.3	-0.1	+0.1
carbon source	D-Galactose (C)	-1.3	+0.4	-0.1	-0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-0.3	+0.2	-0.3	+0.5
carbon source	Carbon source D-Mannitol 2.5 mM	-1.6	+0.2	+0.1	+0.1	+0.0
solid stress	80% Methanol 3 mM; solid stress	-1.5	+0.1	+0.2	+0.1	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.4	+0.2	+0.1	-0.1	+0.3
carbon source	L-Valine (C)	-1.2	+0.7	-0.4	-0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-0.4	+0.7	+0.3	-0.3
ecofab	LB in EcoFAB_3.5mL	-1.1	+0.7	-0.0	+0.1	+0.2
seeds	Growth on radish seeds for 24 hours	-1.2	-0.0	+0.7	+0.4	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.7	-0.0	+0.4	+0.1
soil	soil sample 6; outgrowth in LB	+1.3	-0.4	+0.2	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.9	+0.1	-0.2	+0.3	-0.6
lb	LB_control	+1.0	-0.3	+0.3	+0.3	+0.1
root	root sample 6; outgrowth in LB	+1.3	-0.8	+0.5	+0.4	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.6	-0.1	-0.0	-0.2	+0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	+0.4	-0.2	+0.7	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0	+0.3	+0.2	+0.1	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.7	-0.4	+0.6	+0.7	+0.5
soil	soil sample 7; outgrowth in LB	+1.8	-0.1	+0.1	+0.1	+0.4
soil	soil sample 3; outgrowth in LB	+1.0	+0.3	+0.8	+0.1	+0.3