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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF690 and GFF691 are separated by 82 nucleotides
GFF691 and GFF692 are separated by 155 nucleotides
GFF692 and GFF693 overlap by 4 nucleotides
GFF693 and GFF694 are separated by 18 nucleotides
GFF690 - Transcriptional regulator, IclR family, at 744,786 to 745,628
GFF690
GFF691 - hypothetical protein, at 745,711 to 747,162
GFF691
GFF692 - BUG/TctC family periplasmic protein, at 747,318 to 748,313
GFF692
GFF693 - BUG/TctC family periplasmic protein, at 748,310 to 749,326
GFF693
GFF694 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 749,345 to 750,208
GFF694
Group
Condition
GFF690
GFF691
GFF692
GFF693
GFF694
complex community
Community=arabino-guar; Passage=4
-0.7
-0.1
-0.3
+0.1
-3.6
complex community
Community=Locust bean gum; Passage=4
-2.9
+0.2
+0.1
+0.3
-2.2
complex community
Community=Locust bean gum; Passage=4
-0.6
-0.1
+0.1
+0.1
-2.4
complex community
Community=guar; Passage=4
+0.1
-0.3
+0.1
+0.0
-2.8
complex community
Community=arabino-guar; Passage=4
-0.4
-0.2
+0.1
-0.0
-1.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.7
-0.1
-0.1
-0.1
-0.7
complex community
Community=Locust bean gum; Passage=4
-1.0
+0.1
-0.0
+0.1
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.5
+0.0
-0.0
-0.0
-1.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
+0.0
-0.1
+0.1
-1.0
complex community
Community=Kojac gum; Passage=1
-0.5
-0.2
-0.0
+0.0
-0.7
no phage control
no phage control
-0.5
-0.1
+0.0
+0.0
-0.8
no phage control
no phage control
-0.6
-0.0
-0.0
-0.0
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
-0.1
-0.0
+0.0
-0.4
phage
phage_bap4
-0.2
-0.2
-0.1
-0.0
-0.5
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.6
-0.1
+0.1
-0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.1
+0.1
-0.1
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.6
-0.2
-0.1
-0.1
+0.3
complex community
Community=guar; Passage=4
-0.6
-0.0
-0.0
+0.1
-0.1
no phage control
no phage control
+0.1
-0.1
-0.0
+0.1
-0.6
vitamin
M9 with Supernatant from Cyptococcus
-0.8
+0.0
-0.1
-0.1
+0.3
phage
phage_bap4
-0.2
+0.1
-0.1
+0.0
-0.5
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
+0.2
-0.1
+0.0
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.1
+0.1
-0.1
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
+0.1
-0.1
-0.1
+0.4
complex community
Community=arabino-guar; Passage=4
-0.6
-0.2
+0.2
+0.0
+0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.0
+0.0
-0.1
+0.6
complex community
Community=arabino-guar; Passage=4
+0.6
-0.3
-0.2
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.0
+0.2
-0.1
+0.5
phage
phage_bap4
+0.4
+0.1
+0.2
+0.1
-0.2
complex community
Community=Kojac gum; Passage=4
+0.1
+0.3
+0.2
-0.1
+0.4
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