Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00340 and PS417_00345 overlap by 4 nucleotidesPS417_00345 and PS417_00350 are separated by 161 nucleotidesPS417_00350 and PS417_00355 are separated by 51 nucleotidesPS417_00355 and PS417_00360 overlap by 1 nucleotides PS417_00340: PS417_00340 - protoheme IX farnesyltransferase, at 66,005 to 66,904 _00340 PS417_00345: PS417_00345 - copper-binding protein, at 66,901 to 67,536 _00345 PS417_00350: PS417_00350 - methionine ABC transporter substrate-binding protein, at 67,698 to 68,468 _00350 PS417_00355: PS417_00355 - metal ABC transporter permease, at 68,520 to 69,194 _00355 PS417_00360: PS417_00360 - methionine ABC transporter ATP-binding protein, at 69,194 to 70,201 _00360
Group Condition PS417_00340 PS417_00345 PS417_00350 PS417_00355 PS417_00360
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -1.7 -0.2 -3.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.5 -1.1 -3.4 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 -4.2 +0.7 -0.0 N.D.
motility_chemotaxis Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -2.7 -0.2 -0.2 N.D.
liquid stress Fraxetin 3 mM; liquid stress -0.0 -3.0 -0.1 +0.0 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 -2.3 -0.3 -0.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 -2.2 -0.5 +0.0 N.D.
phage Wcs_0.1 +0.4 -1.1 -0.3 -1.8 N.D.
carbon source L-Valine (C) +0.2 -0.0 -0.1 -2.8 N.D.
liquid stress Scopoletin 3 mM; liquid stress -0.1 -2.7 -0.1 +0.2 N.D.
soil soil sample 3; outgrowth in LB -0.1 +0.2 +0.1 -2.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.0 -3.2 +0.3 +0.6 N.D.
solid stress Fraxetin 3 mM; solid stress +0.1 -3.2 +0.3 +0.9 N.D.
liquid stress Fraxetin 2 mM; liquid stress -0.2 -2.2 -0.2 +0.8 N.D.
liquid stress Fraxetin 3 mM; liquid stress +0.0 -2.3 +0.3 +0.2 N.D.
solid stress 80% Methanol 0.5 mM; solid stress -0.1 -2.4 -0.0 +0.8 N.D.
solid stress Fraxetin 3 mM; solid stress -0.2 -2.5 +0.7 +0.3 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -2.2 -0.2 +1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -2.0 -0.4 +0.5 N.D.
seeds Growth on radish seeds for 72 hours +0.0 +0.8 -0.8 -1.3 N.D.
phage P. simiae OR Antrim MOI 1 +0.3 +0.8 -0.5 -1.8 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.4 -1.7 +0.6 -0.5 N.D.
soil soil sample 5; outgrowth in LB -0.5 +1.0 -0.5 -1.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.2 -1.5 +0.1 +0.9 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.1 -2.2 +0.5 +1.0 N.D.
phage JP1 MOI 0.1 +0.8 -0.8 -0.3 +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +1.6 -0.6 -1.1 N.D.
phage P. simiae Grant Run MOI 0.1 -0.0 -0.5 -0.5 +2.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +1.5 -0.8 +0.7 N.D.
root root sample 6; outgrowth in LB +0.2 +2.2 +0.2 -0.9 N.D.
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