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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF6835 and GFF6836 are separated by 74 nucleotides
GFF6836 and GFF6837 are separated by 232 nucleotides
GFF6837 and GFF6838 are separated by 97 nucleotides
GFF6838 and GFF6839 are separated by 123 nucleotides
GFF6835 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 19,919 to 20,503
GFF6835
GFF6836 - hypothetical protein, at 20,578 to 20,931
GFF6836
GFF6837 - BUG/TctC family periplasmic protein, at 21,164 to 22,132
GFF6837
GFF6838 - BUG/TctC family periplasmic protein, at 22,230 to 23,222
GFF6838
GFF6839 - hypothetical protein, at 23,346 to 24,131
GFF6839
Group
Condition
GFF6835
GFF6836
GFF6837
GFF6838
GFF6839
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.3
+0.1
-0.4
-3.4
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.0
-0.5
-0.2
-1.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
-0.1
+0.1
-0.1
-1.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
+0.1
+0.0
-0.1
-1.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.0
-0.2
+0.1
-1.1
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.0
-0.1
-0.0
-1.0
complex community
Community=arabino-guar; Passage=4
+0.2
+0.2
+0.2
-0.1
-1.5
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.2
+0.0
-0.0
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.1
-0.2
+0.0
-0.6
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.2
+0.1
+0.1
-1.2
complex community
Community=guar; Passage=4
-0.0
+0.1
+0.2
-0.1
-1.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.0
-0.2
+0.1
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.0
+0.0
+0.1
-0.7
phage
phage_bap4
+0.1
-0.0
+0.2
+0.0
-0.8
complex community
Community=Locust bean gum; Passage=1
-0.0
-0.1
+0.1
-0.0
-0.5
complex community
Community=Kojac gum; Passage=4
-0.0
+0.3
+0.1
+0.1
-0.7
no phage control
no phage control
+0.1
+0.2
+0.0
+0.1
-0.7
complex community
Community=arabino-guar; Passage=4
+0.1
+0.4
-0.1
+0.3
-0.9
complex community
Community=Kojac gum; Passage=1
-0.2
-0.2
+0.0
-0.0
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.2
+0.1
+0.1
-0.5
phage
phage_bap4
+0.2
+0.2
-0.1
-0.1
-0.3
complex community
Community=arabino-guar; Passage=4
+0.0
+0.0
+0.3
+0.1
-0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.0
+0.1
-0.1
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.1
+0.0
+0.1
+0.3
complex community
Community=guar; Passage=4
-0.1
-0.4
+0.0
+0.1
+0.7
phage
phage_bap4
+0.2
+0.1
+0.1
+0.1
-0.2
complex community
Community=guar; Passage=4
+0.0
-0.1
-0.0
+0.2
+0.6
complex community
Community=arabino-guar; Passage=4
+0.0
-0.3
-0.2
+0.0
+1.2
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.3
+0.1
+0.1
+0.9
complex community
Community=guar; Passage=4
-0.1
-0.3
+0.3
-0.2
+1.1
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