Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03465 and PS417_03470 overlap by 4 nucleotidesPS417_03470 and PS417_03475 overlap by 14 nucleotidesPS417_03475 and PS417_03480 overlap by 4 nucleotidesPS417_03480 and PS417_03485 overlap by 4 nucleotides PS417_03465: PS417_03465 - type III secretion protein, at 797,162 to 798,061 _03465 PS417_03470: PS417_03470 - ATP synthase, at 798,058 to 799,416 _03470 PS417_03475: PS417_03475 - type III secretion protein, at 799,403 to 799,831 _03475 PS417_03480: PS417_03480 - type III secretion protein, at 799,828 to 800,286 _03480 PS417_03485: PS417_03485 - type III secretion protein, at 800,283 to 801,296 _03485
Group Condition PS417_03465 PS417_03470 PS417_03475 PS417_03480 PS417_03485
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.0 -1.0 -0.9 N.D. +0.3
carbon source L-Valine (C) -3.6 +0.1 -0.2 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 -1.0 -0.5 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 -1.3 -0.3 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -3.3 -0.3 -0.0 N.D. -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.9 -0.9 N.D. -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -0.3 -0.2 N.D. -0.9
soil soil sample 3; outgrowth in LB -1.8 -0.1 -0.1 N.D. -1.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.9 -0.9 +0.0 N.D. +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -1.1 -1.3 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.7 -0.9 N.D. -0.0
stress R2A with Fusaric 120 ug/mL -1.5 -0.5 -0.1 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -1.5 -0.5 N.D. -1.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml -2.5 +0.5 -0.6 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 -0.9 -1.5 N.D. -0.4
solid stress Scopoletin 2 mM; solid stress -1.8 +0.3 -0.4 N.D. -0.1
solid stress Scopoletin 0.5 mM; solid stress -1.8 +0.4 -0.3 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 +0.6 +0.1 N.D. +0.1
phage JP1 MOI 0.1 -2.3 +1.1 -0.3 N.D. -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.8 -1.2 N.D. -0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml -2.7 -0.1 +1.3 N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.2 -0.8 -0.1 N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 -1.0 -0.2 N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 -0.9 +0.4 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 +0.3 -1.0 N.D. +1.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.8 +0.3 -0.5 N.D. -0.1
seeds Growth on radish seeds for 72 hours +1.2 -0.6 +0.5 N.D. +0.9
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +1.1 +0.3 +0.5 N.D. +0.6
phage P. simiae Grant Run MOI 10 +1.5 +0.1 +0.9 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +0.2 +2.2 N.D. -0.1
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