Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF679 and GFF680 overlap by 32 nucleotidesGFF680 and GFF681 are separated by 174 nucleotidesGFF681 and GFF682 overlap by 4 nucleotidesGFF682 and GFF683 overlap by 12 nucleotides GFF679 - DNA polymerase-like protein PA0670, at 733,393 to 734,748 GFF679 GFF680 - RecA/RadA recombinase, at 734,717 to 735,523 GFF680 GFF681 - Hypothetical protein in cluster with At3g50560-like gene family, at 735,698 to 736,537 GFF681 GFF682 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 736,534 to 737,139 GFF682 GFF683 - Transcriptional regulator, LysR family, at 737,128 to 738,048 GFF683
Group Condition GFF679 GFF680 GFF681 GFF682 GFF683
complex community Community=guar; Passage=4 -1.1 -1.5 +0.2 -0.3 -1.1
complex community Community=Kojac gum; Passage=4 -1.1 -0.8 -0.0 -0.3 -1.6
complex community Community=arabino-guar; Passage=4 -0.5 -4.1 +0.4 +0.9 -0.1
complex community Community=arabino-guar; Passage=4 -0.1 -1.2 -0.4 +0.4 -0.9
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.9 -0.2 -0.1 -0.6
vitamin M9 with Supernatant from Cyptococcus -0.4 -1.4 +0.0 +0.2 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 -1.0 +0.0 +0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.6 -0.9 +0.1 +0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -1.1 +0.0 -0.1 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.6 -0.5 -0.0 -0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.6 -0.4 -0.0 +0.2 -0.4
complex community Community=Locust bean gum; Passage=4 -0.2 -1.2 +0.0 +0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.7 -0.5 +0.1 +0.1 -0.1
complex community Community=Locust bean gum; Passage=4 -0.7 +0.2 -0.1 -0.7 +0.3
complex community Community=guar; Passage=4 -0.3 -0.4 +0.2 +0.5 -0.8
complex community Community=guar; Passage=4 -0.7 -0.9 +0.1 +0.6 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 -0.4 +0.1 +0.2 -0.3
complex community Community=Locust bean gum; Passage=4 -0.3 +0.4 +0.1 -0.2 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 -0.7 +0.1 +0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus +0.5 -0.2 -0.2 -0.2 -0.4
complex community Community=guar; Passage=4 -0.2 -0.4 +0.4 +0.2 -0.3
phage phage_bap4 -0.4 -0.3 -0.0 +0.1 +0.5
complex community Community=arabino-guar; Passage=4 -1.1 +0.9 +0.1 +0.5 -0.4
complex community Community=arabino-guar; Passage=4 +0.5 +0.3 -0.4 -0.0 -0.1
phage phage_bap4 -0.2 +0.7 -0.1 +0.1 +0.1
no phage control no phage control -0.3 +0.5 +0.0 -0.0 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 +0.6 +0.2 +0.1 -0.5
phage phage_bap4 -0.2 +0.4 -0.0 +0.3 +0.3
phage phage_bap4 -0.2 +0.7 -0.1 -0.0 +0.5
phage phage_bap4 +0.0 +0.5 -0.0 +0.3 +0.6
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