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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF679 and GFF680 overlap by 32 nucleotides
GFF680 and GFF681 are separated by 174 nucleotides
GFF681 and GFF682 overlap by 4 nucleotides
GFF682 and GFF683 overlap by 12 nucleotides
GFF679 - DNA polymerase-like protein PA0670, at 733,393 to 734,748
GFF679
GFF680 - RecA/RadA recombinase, at 734,717 to 735,523
GFF680
GFF681 - Hypothetical protein in cluster with At3g50560-like gene family, at 735,698 to 736,537
GFF681
GFF682 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 736,534 to 737,139
GFF682
GFF683 - Transcriptional regulator, LysR family, at 737,128 to 738,048
GFF683
Group
Condition
GFF679
GFF680
GFF681
GFF682
GFF683
complex community
Community=guar; Passage=4
-1.1
-1.5
+0.2
-0.3
-1.1
complex community
Community=Kojac gum; Passage=4
-1.1
-0.8
-0.0
-0.3
-1.6
complex community
Community=arabino-guar; Passage=4
-0.5
-4.1
+0.4
+0.9
-0.1
complex community
Community=arabino-guar; Passage=4
-0.1
-1.2
-0.4
+0.4
-0.9
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
-0.9
-0.2
-0.1
-0.6
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-1.4
+0.0
+0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.4
-1.0
+0.0
+0.1
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.6
-0.9
+0.1
+0.1
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-1.1
+0.0
-0.1
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.6
-0.5
-0.0
-0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.6
-0.4
-0.0
+0.2
-0.4
complex community
Community=Locust bean gum; Passage=4
-0.2
-1.2
+0.0
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.7
-0.5
+0.1
+0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.7
+0.2
-0.1
-0.7
+0.3
complex community
Community=guar; Passage=4
-0.3
-0.4
+0.2
+0.5
-0.8
complex community
Community=guar; Passage=4
-0.7
-0.9
+0.1
+0.6
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
-0.4
+0.1
+0.2
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.4
+0.1
-0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
-0.7
+0.1
+0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.5
-0.2
-0.2
-0.2
-0.4
complex community
Community=guar; Passage=4
-0.2
-0.4
+0.4
+0.2
-0.3
phage
phage_bap4
-0.4
-0.3
-0.0
+0.1
+0.5
complex community
Community=arabino-guar; Passage=4
-1.1
+0.9
+0.1
+0.5
-0.4
complex community
Community=arabino-guar; Passage=4
+0.5
+0.3
-0.4
-0.0
-0.1
phage
phage_bap4
-0.2
+0.7
-0.1
+0.1
+0.1
no phage control
no phage control
-0.3
+0.5
+0.0
-0.0
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.4
+0.6
+0.2
+0.1
-0.5
phage
phage_bap4
-0.2
+0.4
-0.0
+0.3
+0.3
phage
phage_bap4
-0.2
+0.7
-0.1
-0.0
+0.5
phage
phage_bap4
+0.0
+0.5
-0.0
+0.3
+0.6
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