Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6798 and GFF6799 are separated by 27 nucleotidesGFF6799 and GFF6800 are separated by 15 nucleotidesGFF6800 and GFF6801 overlap by 4 nucleotidesGFF6801 and GFF6802 are separated by 97 nucleotides GFF6798 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 45,714 to 46,367 GFF6798 GFF6799 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 46,395 to 47,057 GFF6799 GFF6800 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 47,073 to 47,876 GFF6800 GFF6801 - Transcriptional regulator, GntR family, at 47,873 to 48,664 GFF6801 GFF6802 - Uncharacterized MFS-type transporter, at 48,762 to 50,102 GFF6802
Group Condition GFF6798 GFF6799 GFF6800 GFF6801 GFF6802
complex community Community=guar; Passage=4 -2.1 -0.1 +0.8 -0.4 -1.1
complex community Community=arabino-guar; Passage=4 -1.7 -0.1 +0.3 +0.0 -0.5
complex community Community=guar; Passage=4 +0.5 -0.4 +0.3 -0.5 -1.1
phage phage_bap4 -0.7 -0.2 +0.0 -0.1 -0.2
phage phage_bap4 -0.2 -0.1 -0.2 -0.2 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.1 -0.5 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 +0.2 -0.2 -0.1 -0.0
complex community Community=Locust bean gum; Passage=4 -0.6 -0.1 +0.2 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.3 -0.3 -0.1 -0.1 -0.2
complex community Community=guar; Passage=4 +0.9 -0.6 -0.2 +0.2 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 +0.2 +0.0 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 +0.4 -0.2 -0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus +0.4 +0.0 -0.6 -0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.5 +0.0 -0.3 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.4 -0.3 -0.1 +0.0 -0.2
complex community Community=arabino-guar; Passage=4 -0.8 +0.4 +0.1 +0.0 +0.3
complex community Community=arabino-guar; Passage=4 -0.5 +0.0 +0.5 +0.4 -0.4
no phage control no phage control -0.3 -0.1 +0.3 -0.1 +0.2
complex community Community=Kojac gum; Passage=1 -0.2 -0.2 +0.4 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.6 -0.2 +0.1 -0.1 -0.2
complex community Community=arabino-guar; Passage=4 +0.1 -0.5 +0.6 -0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.6 +0.2 -0.3 -0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 +0.1 -0.3 +0.0 +0.2
complex community Community=Locust bean gum; Passage=4 +0.1 +0.2 +0.3 -0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.8 +0.2 -0.1 -0.0 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.6 +0.1 +0.3 -0.0 -0.2
vitamin M9 with Supernatant from Cyptococcus +0.6 -0.1 +0.2 +0.1 +0.1
complex community Community=Locust bean gum; Passage=4 +0.5 +0.4 +0.1 -0.1 +0.2
complex community Community=Kojac gum; Passage=4 -0.4 +0.3 +0.5 +0.4 +0.4
complex community Community=guar; Passage=4 +0.7 +0.2 +0.7 -0.0 +0.1
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