Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_00335	PS417_00340	PS417_00345	PS417_00350	PS417_00355
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.6	-1.7	-0.2	-3.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.2	+0.5	-1.1	-3.4
soil	soil sample 3; outgrowth in LB	-1.1	-0.1	+0.2	+0.1	-2.8
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-0.2	-2.7	-0.2	-0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.0	+0.2	-4.2	+0.7	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.5	-2.2	-0.5	+0.0
phage	Wcs_0.1	-0.2	+0.4	-1.1	-0.3	-1.8
liquid stress	Fraxetin 3 mM; liquid stress	+0.2	-0.0	-3.0	-0.1	+0.0
liquid stress	Scopoletin 3 mM; liquid stress	+0.1	-0.1	-2.7	-0.1	+0.2
soil	soil sample 5; outgrowth in LB	-1.4	-0.5	+1.0	-0.5	-1.1
carbon source	L-Valine (C)	+0.3	+0.2	-0.0	-0.1	-2.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-0.0	-3.2	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.2	+0.3	-0.9	-1.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-0.7	-1.0	-0.3	+0.6
solid stress	Fraxetin 3 mM; solid stress	+0.1	+0.1	-3.2	+0.3	+0.9
liquid stress	Fraxetin 2 mM; liquid stress	-0.0	-0.2	-2.2	-0.2	+0.8
solid stress	80% Methanol 0.5 mM; solid stress	-0.0	-0.1	-2.4	-0.0	+0.8
solid stress	Fraxetin 3 mM; solid stress	-0.0	-0.2	-2.5	+0.7	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	-0.5	-2.2	-0.2	+1.4
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.4	+0.4	-1.7	+0.6	-0.5
phage	P. simiae OR Antrim MOI 1	-0.3	+0.3	+0.8	-0.5	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.5	-2.0	-0.4	+0.5
soil	soil sample 6; outgrowth in LB	-1.6	-0.2	+1.3	-0.3	+0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.1	+0.1	-2.2	+0.5	+1.0
soil	soil sample 8; outgrowth in LB	-1.4	-0.2	+1.1	-0.4	+0.3
root	root sample 6; outgrowth in LB	-1.7	+0.2	+2.2	+0.2	-0.9
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.6	-0.1	+1.2	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.1	+1.4	+0.5	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.7	+1.6	-0.6	-1.1
phage	P. simiae Grant Run MOI 0.1	-0.0	-0.0	-0.5	-0.5	+2.2