Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6782 and GFF6783 are separated by 21 nucleotidesGFF6783 and GFF6784 are separated by 40 nucleotidesGFF6784 and GFF6785 are separated by 24 nucleotidesGFF6785 and GFF6786 are separated by 35 nucleotides GFF6782 - TRAP transporter solute receptor, TAXI family precursor, at 31,546 to 32,925 GFF6782 GFF6783 - endo-type 6-aminohexanoate oligomer hydrolase, at 32,947 to 33,975 GFF6783 GFF6784 - D-amino acid dehydrogenase (EC 1.4.99.6), at 34,016 to 35,311 GFF6784 GFF6785 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 35,336 to 35,626 GFF6785 GFF6786 - CopG protein, at 35,662 to 36,123 GFF6786
Group Condition GFF6782 GFF6783 GFF6784 GFF6785 GFF6786
complex community Community=Locust bean gum; Passage=4 -0.8 N.D. -0.5 N.D. -2.9
complex community Community=Locust bean gum; Passage=4 +0.0 N.D. -0.8 N.D. -1.1
complex community Community=arabino-guar; Passage=4 -0.0 N.D. +0.0 N.D. -1.7
complex community Community=guar; Passage=4 -0.9 N.D. -0.3 N.D. -0.5
complex community Community=Kojac gum; Passage=4 -0.1 N.D. -1.2 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 -0.9 N.D. -0.5 N.D. +0.4
phage phage_bap4 -0.4 N.D. -0.3 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 N.D. -0.2 N.D. -0.6
phage phage_bap4 +0.1 N.D. +0.0 N.D. -0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 N.D. -0.1 N.D. -0.4
phage phage_bap4 +0.1 N.D. -0.5 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 N.D. +0.0 N.D. -0.6
complex community Community=Locust bean gum; Passage=4 -0.6 N.D. -0.8 N.D. +1.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 N.D. +0.3 N.D. -0.8
complex community Community=arabino-guar; Passage=4 -0.6 N.D. -0.2 N.D. +0.6
no phage control no phage control +0.3 N.D. -0.0 N.D. -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 N.D. -0.2 N.D. +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 N.D. +0.2 N.D. +0.4
vitamin M9 with Supernatant from Cyptococcus -0.1 N.D. +0.2 N.D. +0.4
vitamin M9 with Supernatant from Cyptococcus +0.2 N.D. -0.1 N.D. +0.4
complex community Community=arabino-guar; Passage=4 -0.5 N.D. -0.1 N.D. +1.2
phage phage_bap4 +0.3 N.D. -0.2 N.D. +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.0 N.D. +0.0 N.D. +0.6
vitamin M9 with Supernatant from Cyptococcus -0.1 N.D. +0.1 N.D. +0.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 N.D. +0.1 N.D. +0.4
complex community Community=Kojac gum; Passage=1 +0.1 N.D. -0.0 N.D. +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 N.D. +0.1 N.D. +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 N.D. +0.4 N.D. +0.6
complex community Community=guar; Passage=4 +0.5 N.D. -0.2 N.D. +0.9
complex community Community=arabino-guar; Passage=4 +0.3 N.D. +0.6 N.D. +1.1
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