Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF676 and GFF677 are separated by 16 nucleotidesGFF677 and GFF678 are separated by 74 nucleotidesGFF678 and GFF679 overlap by 8 nucleotidesGFF679 and GFF680 overlap by 32 nucleotides GFF676 - Aminoglycoside 9-phosphotransferase (EC 2.7.1.-) => APH(9)-I, at 728,010 to 729,026 GFF676 GFF677 - FIG00931906: hypothetical protein, at 729,043 to 729,972 GFF677 GFF678 - Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7), at 730,047 to 733,400 GFF678 GFF679 - DNA polymerase-like protein PA0670, at 733,393 to 734,748 GFF679 GFF680 - RecA/RadA recombinase, at 734,717 to 735,523 GFF680
Group Condition GFF676 GFF677 GFF678 GFF679 GFF680
complex community Community=arabino-guar; Passage=4 +0.1 -0.3 +0.0 -0.5 -4.1
complex community Community=guar; Passage=4 -0.1 +0.0 +0.1 -1.1 -1.5
complex community Community=Locust bean gum; Passage=4 -0.3 -0.2 -0.2 -0.2 -1.2
complex community Community=Kojac gum; Passage=4 +0.0 +0.1 -0.1 -1.1 -0.8
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.0 +0.2 -0.4 -1.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 -0.1 +0.0 -0.6 -0.9
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 -0.2 +0.1 -0.4 -1.0
complex community Community=guar; Passage=4 +0.0 -0.1 +0.1 -0.7 -0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 -0.3 -0.1 -0.6 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.1 +0.0 -0.7 -0.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 -0.1 +0.1 -0.3 -0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 +0.1 -0.1 -0.6 -0.4
complex community Community=arabino-guar; Passage=4 +0.2 +0.0 -0.1 -0.1 -1.2
complex community Community=Locust bean gum; Passage=4 +0.2 -0.5 -0.2 -0.7 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.1 -0.1 -0.4 -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 +0.1 +0.0 +0.1 -1.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 -0.1 +0.1 -0.2 -0.5
phage phage_bap4 +0.2 -0.2 -0.0 -0.4 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.0 -0.1 -0.0 +0.2 -0.7
complex community Community=guar; Passage=4 -0.2 +0.4 +0.0 -0.3 -0.4
complex community Community=arabino-guar; Passage=4 -0.1 -0.1 -0.2 -1.1 +0.9
complex community Community=guar; Passage=4 +0.3 -0.1 +0.0 -0.2 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.1 -0.0 -0.5 +0.3
no phage control no phage control -0.1 -0.2 -0.1 -0.3 +0.5
phage phage_bap4 +0.2 +0.1 -0.0 -0.5 +0.3
phage phage_bap4 +0.0 -0.3 -0.0 -0.2 +0.7
phage phage_bap4 +0.1 -0.1 +0.0 -0.2 +0.7
complex community Community=Locust bean gum; Passage=4 +0.2 +0.3 -0.1 -0.3 +0.4
complex community Community=arabino-guar; Passage=4 -0.1 +0.1 +0.1 +0.5 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 +0.1 -0.1 +0.4 +0.6
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