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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF6770 and GFF6771 overlap by 4 nucleotides
GFF6771 and GFF6772 are separated by 0 nucleotides
GFF6772 and GFF6773 are separated by 150 nucleotides
GFF6773 and GFF6774 are separated by 107 nucleotides
GFF6770 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 16,198 to 16,842
GFF6770
GFF6771 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 16,839 to 17,750
GFF6771
GFF6772 - L-arabonate dehydratase (EC 4.2.1.25), at 17,751 to 19,487
GFF6772
GFF6773 - Transcriptional regulator, GntR family, at 19,638 to 20,381
GFF6773
GFF6774 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 20,489 to 21,871
GFF6774
Group
Condition
GFF6770
GFF6771
GFF6772
GFF6773
GFF6774
complex community
Community=arabino-guar; Passage=4
-3.1
-0.4
-2.3
-0.8
-0.2
complex community
Community=Locust bean gum; Passage=4
-3.6
-0.5
-1.7
+0.1
-0.7
complex community
Community=Locust bean gum; Passage=4
-4.4
-0.5
-1.2
+0.3
-0.6
complex community
Community=arabino-guar; Passage=4
-4.2
-0.3
-0.9
-0.7
+0.2
complex community
Community=Locust bean gum; Passage=4
-4.2
+0.2
-0.3
-1.0
-0.5
complex community
Community=Locust bean gum; Passage=4
-4.2
+0.1
-0.4
+0.1
-0.9
complex community
Community=arabino-guar; Passage=4
-3.5
-0.0
-0.3
-1.0
-0.2
complex community
Community=guar; Passage=4
-4.0
-0.0
-0.5
-0.3
+0.0
complex community
Community=arabino-guar; Passage=4
-2.8
-0.0
-1.7
-0.3
+0.1
complex community
Community=guar; Passage=4
-2.8
+0.5
-0.3
-1.4
-0.0
complex community
Community=guar; Passage=4
-1.4
+0.1
-1.9
-0.4
+0.1
complex community
Community=guar; Passage=4
-2.1
-0.4
-1.3
-0.0
+0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
+0.0
-0.5
-0.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.2
-0.5
-0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
+0.0
-0.5
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
-0.1
-0.3
+0.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.1
+0.3
-0.3
-0.2
phage
phage_bap4
+0.2
+0.0
-0.4
-0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.5
-0.1
-0.2
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.1
-0.2
-0.2
+0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.6
+0.0
+0.3
-0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.0
+0.5
-0.2
-0.4
phage
phage_bap4
-0.0
+0.2
-0.6
+0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
-0.3
+0.4
-0.2
+0.1
no phage control
no phage control
+0.2
-0.1
-0.4
+0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
-0.3
+0.0
+0.3
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.3
+0.1
+0.6
-0.2
-0.2
phage
phage_bap4
+0.3
-0.2
-0.2
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.2
+0.5
+0.1
+0.1
complex community
Community=Kojac gum; Passage=4
-0.1
+0.4
+0.6
-0.6
+0.2
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