Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF675 and GFF676 are separated by 33 nucleotidesGFF676 and GFF677 are separated by 16 nucleotidesGFF677 and GFF678 are separated by 74 nucleotidesGFF678 and GFF679 overlap by 8 nucleotides GFF675 - KEGG: 2'-5' RNA ligase , at 727,449 to 727,976 GFF675 GFF676 - Aminoglycoside 9-phosphotransferase (EC 2.7.1.-) => APH(9)-I, at 728,010 to 729,026 GFF676 GFF677 - FIG00931906: hypothetical protein, at 729,043 to 729,972 GFF677 GFF678 - Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7), at 730,047 to 733,400 GFF678 GFF679 - DNA polymerase-like protein PA0670, at 733,393 to 734,748 GFF679
Group Condition GFF675 GFF676 GFF677 GFF678 GFF679
complex community Community=arabino-guar; Passage=4 -0.8 -0.1 -0.1 -0.2 -1.1
complex community Community=guar; Passage=4 -1.0 -0.1 +0.0 +0.1 -1.1
complex community Community=arabino-guar; Passage=4 -2.0 -0.1 +0.1 +0.1 +0.5
complex community Community=Locust bean gum; Passage=4 -0.7 -0.3 -0.2 -0.2 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.5 -0.1 -0.1 +0.0 -0.7
complex community Community=Kojac gum; Passage=4 -0.2 +0.0 +0.1 -0.1 -1.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.1 -0.3 -0.1 -0.6
complex community Community=Locust bean gum; Passage=4 +0.1 +0.2 -0.5 -0.2 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL -0.5 -0.1 -0.1 -0.0 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 +0.0 -0.1 +0.0 -0.6
vitamin M9 with Supernatant from Cyptococcus -0.5 +0.0 -0.1 +0.0 -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 +0.0 -0.2 +0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 -0.2 +0.1 -0.1 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 -0.2 +0.1 -0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.4 -0.2 +0.0 +0.0 -0.2
complex community Community=Locust bean gum; Passage=4 -0.5 +0.2 -0.1 -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.1 -0.0 -0.0 -0.4
no phage control no phage control +0.2 -0.0 -0.1 -0.1 -0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.3 -0.1 -0.1 +0.2 -0.2
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.1 -0.0 +0.2 -0.4
no phage control no phage control +0.2 -0.1 -0.2 -0.1 -0.3
complex community Community=arabino-guar; Passage=4 +0.4 +0.1 -0.3 +0.0 -0.5
phage phage_bap4 +0.2 +0.2 -0.2 -0.0 -0.4
complex community Community=guar; Passage=4 +0.4 +0.0 -0.1 +0.1 -0.7
phage phage_bap4 +0.6 -0.1 -0.1 -0.1 -0.4
vitamin M9 with Supernatant from Cyptococcus -0.4 -0.1 -0.1 +0.0 +0.5
complex community Community=Locust bean gum; Passage=4 +0.2 +0.2 +0.3 -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.0 +0.1 -0.1 +0.4
complex community Community=guar; Passage=4 +0.6 -0.2 +0.4 +0.0 -0.3
complex community Community=guar; Passage=4 +0.5 +0.3 -0.1 +0.0 -0.2
remove
GFF675
plot
remove
GFF676
plot
remove
GFF677
remove
GFF678
plot
remove
GFF679
plot