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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF6758 and GFF6759 are separated by 61 nucleotides
GFF6759 and GFF6760 are separated by 101 nucleotides
GFF6760 and GFF6761 overlap by 4 nucleotides
GFF6761 and GFF6762 are separated by 145 nucleotides
GFF6758 - Lactoylglutathione lyase (EC 4.4.1.5), at 5,227 to 5,676
GFF6758
GFF6759 - Glutathione S-transferase, at 5,738 to 6,418
GFF6759
GFF6760 - Ferric iron ABC transporter, ATP-binding protein, at 6,520 to 7,206
GFF6760
GFF6761 - Ferric iron ABC transporter, permease protein, at 7,203 to 8,879
GFF6761
GFF6762 - Ferric iron ABC transporter, iron-binding protein, at 9,025 to 10,086
GFF6762
Group
Condition
GFF6758
GFF6759
GFF6760
GFF6761
GFF6762
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.3
-1.1
+0.2
+0.0
complex community
Community=guar; Passage=4
-0.1
-0.4
-0.2
+0.1
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.5
-0.5
-0.8
+0.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
+0.5
-0.5
-0.1
-0.2
phage
phage_bap4
-0.1
+0.1
-0.3
-0.0
+0.2
complex community
Community=arabino-guar; Passage=4
-0.3
+0.1
+0.2
+0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.5
-0.3
+0.0
-0.1
no phage control
no phage control
-0.0
-0.3
+0.4
+0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.0
+0.4
+0.1
+0.0
complex community
Community=Locust bean gum; Passage=4
+0.4
-0.6
+0.6
+0.3
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.5
-0.2
+0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.5
-0.0
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.8
-0.2
+0.1
+0.0
phage
phage_bap4
-0.1
+0.2
+0.4
+0.0
-0.0
phage
phage_bap4
-0.1
+0.4
+0.2
+0.1
+0.0
complex community
Community=guar; Passage=4
-0.1
-0.3
+1.1
+0.0
-0.0
phage
phage_bap4
-0.1
+0.5
+0.2
-0.0
+0.0
complex community
Community=arabino-guar; Passage=4
-0.2
+0.1
+0.3
+0.4
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
+0.7
+0.0
-0.1
+0.0
complex community
Community=arabino-guar; Passage=4
+0.1
+0.6
+0.1
-0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.7
-0.1
+0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.5
+0.5
+0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
+0.6
+0.2
+0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.6
+0.4
+0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.4
+0.5
+0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
+0.5
+0.5
+0.0
+0.0
complex community
Community=guar; Passage=4
+0.4
+0.5
+0.1
-0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.3
+0.5
+0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
+0.8
+0.3
+0.1
+0.1
complex community
Community=arabino-guar; Passage=4
-0.0
+0.5
+0.9
+0.2
-0.3
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