Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03405	PS417_03410	PS417_03415	PS417_03420	PS417_03430
phage	JP1 MOI 1	-0.5	-0.2	-0.5	-0.1	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.0	-0.2	-0.1	-1.4
phage	P. simiae OR Antrim MOI 10	-0.3	-0.5	-0.2	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.5	-0.4	+0.1	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.6	-0.6	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.0	-0.7	+0.1	-0.7
supernatant control	Vogels_fungal_media 0.1X	+0.0	+0.1	-0.7	+0.0	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.1	+0.6	-0.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.2	+0.0	+0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.8	+0.3	+0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.2	-0.4	-0.2	-0.7
stress	Polymyxin B sulfate 0.006 mg/ml	+0.2	+0.0	+0.1	+0.0	-1.2
stress	Doxycycline hyclate 0.001 mg/ml	+0.4	+0.2	-0.7	+0.1	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.2	-0.4	+0.3	-0.9
root	root sample 6; outgrowth in LB	+0.2	+0.7	-0.3	+0.0	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.5	-0.7	+0.2	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	-0.3	+0.6	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.6	-0.1	-0.0	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.4	-0.4	-0.0	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.0	+0.9	+0.1	-0.8
seeds	Growth on radish seeds for 72 hours	-0.1	+0.5	-0.4	-0.2	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.6	-0.1	+0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.4	+0.2	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+1.3	+0.0	+0.4	-0.5
phage	P. simiae OR1 MOI 0.1	+0.0	-0.3	+0.1	-0.2	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.1	+0.3	+0.3	+0.6
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	+0.2	+0.2	-0.2	+0.6
motility	inner cut, LB soft agar motility assay	-0.0	-0.1	+0.4	+0.1	+1.0
phage	P. simiae ORA MOI 0.1	+0.3	+0.3	+0.9	+0.1	+0.1
phage	Wcs_1	+0.1	+0.0	+0.4	-0.1	+1.4