Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6711 and GFF6712 overlap by 1 nucleotidesGFF6712 and GFF6713 are separated by 67 nucleotidesGFF6713 and GFF6714 overlap by 4 nucleotidesGFF6714 and GFF6715 are separated by 10 nucleotides GFF6711 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 19,395 to 20,219 GFF6711 GFF6712 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 20,219 to 21,259 GFF6712 GFF6713 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 21,327 to 22,304 GFF6713 GFF6714 - Putative cryptic D-serine deaminase (EC 4.3.1.18), at 22,301 to 23,617 GFF6714 GFF6715 - Transcriptional regulator of RpiR family in catabolic operon, at 23,628 to 24,527 GFF6715
Group Condition GFF6711 GFF6712 GFF6713 GFF6714 GFF6715
complex community Community=arabino-guar; Passage=4 +0.6 -0.8 -1.4 -0.1 -1.3
complex community Community=arabino-guar; Passage=4 +0.0 -1.1 -0.3 -0.5 -0.4
complex community Community=guar; Passage=4 -0.9 -0.4 -0.1 +0.6 -1.5
phage phage_bap4 -0.2 -0.1 -0.5 -0.0 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.2 -1.0 -0.3 -0.2
phage phage_bap4 +0.2 -0.0 -1.0 +0.0 -0.0
complex community Community=arabino-guar; Passage=4 +0.2 +0.8 -0.4 -0.2 -1.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 -0.4 +0.2 -0.0 -0.5
phage phage_bap4 -0.2 -0.3 -0.2 -0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.1 -0.5 -0.0 -0.4
complex community Community=Locust bean gum; Passage=4 +0.4 +0.4 +0.0 +0.3 -1.4
complex community Community=Locust bean gum; Passage=4 +0.2 +0.4 -0.5 +0.2 -0.6
phage phage_bap4 -0.1 +0.4 -0.5 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.6 +0.0 -0.1 -0.4 -0.3
complex community Community=guar; Passage=4 +0.3 +0.1 +0.1 -0.1 -0.5
no phage control no phage control +0.2 +0.2 -0.4 +0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus -0.0 -0.4 +0.5 +0.3 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.6 +0.1 -0.1 -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.6 +0.3 -0.2 -0.1 -0.2
complex community Community=guar; Passage=4 +0.5 +0.0 -0.1 +0.6 -0.6
complex community Community=arabino-guar; Passage=4 -0.2 +1.1 +0.4 +0.2 -1.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 +0.2 +0.3 -0.3 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.6 -0.2 +0.6 -0.2 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.6 +0.6 +0.1 -0.0 -0.4
complex community Community=Kojac gum; Passage=4 +0.4 +0.5 +0.3 +0.6 -0.8
vitamin M9 with calcium pantothenate 10 mg/mL +0.5 +0.5 +0.1 +0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus +0.3 +0.3 +0.7 -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 +0.3 +0.4 +0.2 -0.0
complex community Community=Locust bean gum; Passage=4 +0.4 +0.5 -0.0 +0.1 +0.3
complex community Community=guar; Passage=4 +0.7 +0.6 +0.9 -0.5 -0.3
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