Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00330	PS417_00335	PS417_00340	PS417_00345	PS417_00350
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.0	-0.3	-0.6	-1.7	-0.2
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.2	-0.2	-2.7	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	-0.0	-0.4	-2.3	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	-0.1	-0.5	-2.2	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	-0.2	+0.2	-0.0	-3.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.0	-0.0	-2.0	-0.6
liquid stress	Scopoletin 3 mM; liquid stress	-0.3	+0.1	-0.1	-2.7	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.1	-0.5	-2.2	-0.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.3	-0.0	+0.2	-4.2	+0.7
soil	soil sample 5; outgrowth in LB	-1.7	-1.4	-0.5	+1.0	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.1	-0.0	-3.2	+0.3
solid stress	Fraxetin 3 mM; solid stress	-0.0	+0.1	+0.1	-3.2	+0.3
soil	soil sample 2; outgrowth in LB	-1.2	-1.3	-0.0	+0.2	-0.3
soil	soil sample 8; outgrowth in LB	-1.4	-1.4	-0.2	+1.1	-0.4
soil	soil sample 6; outgrowth in LB	-1.4	-1.6	-0.2	+1.3	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.0	-0.2	-2.5	+0.7
liquid stress	Fraxetin 3 mM; liquid stress	-0.6	+0.0	+0.3	-1.7	-0.2
solid stress	Scopoletin 0.5 mM; solid stress	-0.3	+0.1	-0.1	-2.1	+0.3
liquid stress	Fraxetin 3 mM; liquid stress	-0.2	+0.2	+0.0	-2.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	+0.5	-2.0	-0.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.1	-0.1	+0.1	-2.2	+0.5
soil	soil sample 7; outgrowth in LB	-2.2	-0.7	+0.3	+0.9	-0.1
soil	soil sample 4; outgrowth in LB	-1.2	-1.0	+0.1	+0.6	+0.0
phage	JP1 MOI 0.1	-0.6	-0.3	+0.8	-0.8	-0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.1	-0.4	+0.4	-1.7	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7	-1.6	-0.1	+1.2	+0.2
seeds	Growth on radish seeds for 72 hours	+0.6	-0.7	+0.4	-0.8	-0.5
root	root sample 6; outgrowth in LB	-0.8	-1.7	+0.2	+2.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.0	+0.7	+1.6	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.5	-0.1	+1.4	+0.5