Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF6697 and GFF6698 are separated by 41 nucleotidesGFF6698 and GFF6699 are separated by 175 nucleotidesGFF6699 and GFF6700 are separated by 191 nucleotidesGFF6700 and GFF6701 overlap by 4 nucleotides GFF6697 - Stringent starvation protein A, at 5,489 to 6,100 GFF6697 GFF6698 - ClpXP protease specificity-enhancing factor SspB, at 6,142 to 6,723 GFF6698 GFF6699 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 6,899 to 8,065 GFF6699 GFF6700 - Single-stranded-DNA-specific exonuclease RecJ, at 8,257 to 9,984 GFF6700 GFF6701 - Regulatory protein, RpfE type, at 9,981 to 10,949 GFF6701
Group Condition GFF6697 GFF6698 GFF6699 GFF6700 GFF6701
complex community Community=Locust bean gum; Passage=4 N.D. +0.2 -0.1 -0.3 -3.6
complex community Community=Locust bean gum; Passage=4 N.D. -0.2 -0.1 -0.2 -2.8
complex community Community=arabino-guar; Passage=4 N.D. +0.3 -0.3 -0.7 -2.6
complex community Community=guar; Passage=4 N.D. +0.2 +0.4 -0.6 -2.8
no phage control no phage control N.D. -0.1 -0.0 -2.0 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.3 -0.2 -2.7 +0.2
no phage control no phage control N.D. -0.0 -0.1 -2.1 -0.1
phage phage_bap4 N.D. +0.0 +0.0 -2.3 -0.1
phage phage_bap4 N.D. -0.1 -0.1 -2.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.4 +0.0 -0.4 -2.3
vitamin M9 with Supernatant from Cyptococcus N.D. -0.0 -0.2 -2.4 +0.5
no phage control no phage control N.D. +0.0 +0.1 -1.8 -0.3
complex community Community=guar; Passage=4 N.D. +0.4 +0.1 -0.7 -1.7
phage phage_bap4 N.D. +0.0 +0.0 -2.2 +0.2
phage phage_bap4 N.D. +0.0 -0.2 -2.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.3 -0.2 -2.4 +0.5
phage phage_bap4 N.D. -0.3 -0.2 -1.6 +0.2
phage phage_bap4 N.D. -0.1 +0.1 -2.0 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.3 -0.4 -1.1 -0.4
vitamin M9 with Supernatant from Cyptococcus N.D. +0.1 -0.2 -2.3 +0.7
complex community Community=Locust bean gum; Passage=4 N.D. +0.4 +0.5 -0.3 -1.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.3 -0.2 -1.6 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.3 -0.1 -1.6 +0.5
phage phage_bap4 N.D. -0.3 -0.1 -1.1 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.2 -0.2 -1.6 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.2 -0.2 -1.4 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.3 -0.1 -1.5 +0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.2 +0.1 -1.3 +1.0
complex community Community=arabino-guar; Passage=4 N.D. +0.8 -0.2 -0.7 +0.8
complex community Community=Kojac gum; Passage=4 N.D. +0.0 +0.1 -0.5 +1.6
remove
GFF6697
plot		 remove
GFF6698
plot		 remove
GFF6699		 remove
GFF6700
plot		 remove
GFF6701
plot