Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03380	PS417_03385	PS417_03390	PS417_03395	PS417_03400
agar plate interaction control	Taped volatile agar plate with no fungus	-0.9	-2.9	-0.9	-0.9	-0.8
phage	P. simiae OR Antrim MOI 10	-1.6	-3.0	-0.1	+0.0	-0.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-1.4	-2.8	-0.3	-0.3	+0.4
stress	methylglyoxal 0.032 vol%	-3.5	+0.4	+0.0	+0.2	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.9	+0.2	-0.3	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.0	+0.4	-0.4	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.9	-0.6	+0.3	+0.2	+0.4
liquid stress	Scopoletin 3 mM; liquid stress	-0.1	-3.6	-0.1	+0.4	-0.1
seeds	Growth on radish seeds for 72 hours	-1.2	-2.1	+0.3	-0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	-2.0	+0.0	+0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.9	+0.3	+0.2	+0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-2.7	-0.1	-0.0	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-3.7	+0.6	+0.1	+0.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.1	+0.0	-0.0	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	-0.7	-0.0	+0.4	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-2.1	+0.5	-0.7	+0.6
soil	soil sample 7; outgrowth in LB	+0.4	-1.9	-0.2	+0.4	-0.2
phage	P. simiae OR Antrim MOI 1	-2.1	-0.1	+0.4	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	+0.3	+0.1	-0.0	+0.8
seeds	Growth on radish seeds for 72 hours	+1.8	-2.2	-0.0	-0.6	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.1	+1.6	+0.0	+0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.8	+0.0	+0.1	-0.0	+1.6
carbon source	Gly-Glu (C)	+1.3	-1.5	-0.0	+0.1	+0.2
soil	soil sample 6; outgrowth in LB	+2.0	-0.5	+0.0	-0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	+0.6	+0.3	-0.5	-0.5
stress	Doxycycline hyclate 0.001 mg/ml	+1.7	-0.9	-0.1	+0.4	+0.1
root	root sample 6; outgrowth in LB	+2.2	+0.3	-0.3	-0.1	+0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.3	+2.3	-0.2	+0.3	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.6	+0.4	-0.0	-0.4	+1.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+2.4	+2.7	+0.1	+0.1	+0.2