Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6651 and GFF6652 are separated by 13 nucleotidesGFF6652 and GFF6653 are separated by 53 nucleotidesGFF6653 and GFF6654 are separated by 144 nucleotidesGFF6654 and GFF6655 are separated by 18 nucleotides GFF6651 - Asp/Glu racemase, at 24,983 to 25,624 GFF6651 GFF6652 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 25,638 to 26,552 GFF6652 GFF6653 - Aminotransferase, class III, at 26,606 to 27,940 GFF6653 GFF6654 - Transcriptional regulator, RpiR family, at 28,085 to 28,951 GFF6654 GFF6655 - Transcriptional regulator, GntR family, at 28,970 to 29,665 GFF6655
Group Condition GFF6651 GFF6652 GFF6653 GFF6654 GFF6655
complex community Community=Locust bean gum; Passage=4 N.D. +0.3 -0.5 -0.2 -1.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 -0.1 -0.3 -0.9
complex community Community=arabino-guar; Passage=4 N.D. -0.6 -0.6 +0.2 +0.0
phage phage_bap4 N.D. -0.1 +0.1 -0.2 -0.3
complex community Community=arabino-guar; Passage=4 N.D. -0.5 +0.2 +0.1 -0.4
complex community Community=guar; Passage=4 N.D. +0.4 -0.2 -0.4 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.1 +0.1 -0.2 -0.4
vitamin M9 with Supernatant from Cyptococcus N.D. -0.4 +0.1 -0.0 -0.1
complex community Community=Locust bean gum; Passage=4 N.D. +0.3 -0.0 -0.2 -0.4
complex community Community=Locust bean gum; Passage=1 N.D. -0.2 -0.0 -0.2 +0.1
complex community Community=guar; Passage=4 N.D. +0.1 -0.4 -0.1 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. +0.3 -0.2 -0.2 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.2 +0.2 -0.0 -0.2
complex community Community=arabino-guar; Passage=4 N.D. -0.0 +0.1 -0.0 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.1 +0.1 +0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.4 -0.1 -0.3 -0.1
phage phage_bap4 N.D. +0.0 +0.2 -0.2 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.1 +0.0 -0.3 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.1 +0.2 -0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.2 +0.1 -0.3 -0.1
phage phage_bap4 N.D. -0.1 +0.1 +0.2 -0.1
phage phage_bap4 N.D. +0.3 +0.1 +0.1 -0.4
vitamin M9 with Supernatant from Cyptococcus N.D. +0.1 -0.0 -0.2 +0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. +0.2 +0.1 +0.0 -0.2
complex community Community=arabino-guar; Passage=4 N.D. -0.3 +0.1 +0.6 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.3 +0.0 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.4 +0.2 +0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.3 +0.2 -0.0 +0.1
complex community Community=guar; Passage=4 N.D. +0.5 -0.0 +0.3 -0.0
complex community Community=guar; Passage=4 N.D. +0.3 +0.3 -0.2 +0.6
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