Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03360	PS417_03365	PS417_03370	PS417_03375	PS417_03380
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-0.8	+0.0	-0.1	-3.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	-0.1	-0.4	-4.0
stress	methylglyoxal 0.032 vol%	+0.1	-0.5	-0.3	-0.2	-3.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.7	-0.2	+0.0	-3.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	+0.2	+0.2	-0.1	-3.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	-0.1	-0.1	-3.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.5	-0.1	+0.1	-2.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	-0.4	+0.0	-0.0	-2.1
phage	JP1 MOI 0.1	+0.1	-0.7	-0.1	+0.3	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	-0.3	-0.0	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.7	+0.2	-0.1	-3.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.3	+0.0	-0.0	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	-0.3	+0.3	-2.1
phage	P. simiae OR Antrim MOI 1	+0.4	+0.2	-0.0	-0.1	-2.1
motility	outer cut, LB soft agar motility assay	+0.2	+0.0	+0.3	+0.3	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.7	+0.0	-0.3	-1.4
phage	P. simiae OR1 MOI 0.1	-0.2	-0.7	-0.3	-0.6	+0.9
seeds	Growth on radish seeds for 72 hours	-0.4	-0.2	+0.0	+0.9	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.4	-0.2	+0.2	-1.4
carbon source	L-Valine (C)	-0.6	-0.1	+0.2	-0.6	+1.1
carbon source	L-Valine (C)	-0.3	+0.2	-0.1	+1.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.9	-0.4	+0.2	-0.8	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.9	-0.1	+0.3	+1.2
phage	P. simiae OR Antrim MOI 0.1	+0.2	+0.5	-0.3	-0.4	+1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.3	-0.2	-0.3	+2.6
seeds	Growth on radish seeds for 72 hours	-0.3	+0.5	-0.4	+0.3	+1.8
stress	Doxycycline hyclate 0.001 mg/ml	+0.4	-0.3	+0.2	+0.0	+1.7
soil	soil sample 6; outgrowth in LB	-0.2	+0.6	+0.0	-0.2	+2.0
root	root sample 6; outgrowth in LB	+0.2	+0.3	+0.3	-0.6	+2.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-0.0	-0.4	+0.2	+2.4