Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6597 and GFF6598 are separated by 717 nucleotidesGFF6598 and GFF6599 are separated by 82 nucleotidesGFF6599 and GFF6600 overlap by 4 nucleotidesGFF6600 and GFF6601 overlap by 15 nucleotides GFF6597 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 41,177 to 42,478 GFF6597 GFF6598 - Putative formate dehydrogenase oxidoreductase protein, at 43,196 to 45,472 GFF6598 GFF6599 - NAD-dependent formate dehydrogenase alpha subunit, at 45,555 to 45,800 GFF6599 GFF6600 - Sulfur carrier protein FdhD, at 45,797 to 46,732 GFF6600 GFF6601 - Type IV secretory pathway, VirD2 components (relaxase), at 46,718 to 48,703 GFF6601
Group Condition GFF6597 GFF6598 GFF6599 GFF6600 GFF6601
complex community Community=Locust bean gum; Passage=4 -0.8 +0.3 -0.2 -0.2 -0.3
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.0 -0.5 -0.4 -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.5 -0.0 +0.1 -0.5 -0.0
complex community Community=guar; Passage=4 -0.6 -0.0 +0.1 -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.1 -0.9 -0.1 +0.2
complex community Community=Locust bean gum; Passage=4 -1.1 +0.3 +0.0 -0.1 +0.1
complex community Community=Locust bean gum; Passage=4 +0.3 -0.2 +0.0 -0.9 -0.1
phage phage_bap4 -0.1 -0.3 +0.1 -0.4 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.0 -0.2 -0.6 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.2 -0.3 -0.1 +0.2
phage phage_bap4 -0.3 -0.1 +0.3 -0.2 -0.1
complex community Community=Locust bean gum; Passage=4 -0.8 +0.0 +0.2 +0.3 -0.1
phage phage_bap4 -0.4 -0.1 +0.3 -0.0 -0.1
phage phage_bap4 -0.5 +0.1 +0.4 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.5 -0.1 -0.5 +0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.3 +0.1 -0.3 -0.2 -0.1
complex community Community=guar; Passage=4 -0.8 -0.2 +0.3 +0.6 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 -0.0 -0.2 +0.2 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.1 -0.3 +0.4 -0.1
complex community Community=arabino-guar; Passage=4 -0.1 +0.3 +0.6 -0.7 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.2 -0.3 +0.0 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.3 +0.1 -0.2 +0.2 -0.2
vitamin M9 with Supernatant from Cyptococcus -0.1 +0.1 -0.2 +0.5 -0.1
complex community Community=Kojac gum; Passage=4 +0.3 -0.0 -0.1 +0.2 -0.2
no phage control no phage control +0.2 +0.0 +0.3 +0.2 -0.3
complex community Community=Locust bean gum; Passage=1 +0.4 +0.0 +0.2 -0.0 -0.2
no phage control no phage control +0.2 -0.1 +0.2 +0.3 +0.0
complex community Community=guar; Passage=4 +0.1 +0.1 +0.2 +0.6 -0.5
complex community Community=guar; Passage=4 -0.1 +0.0 +0.9 +1.1 -0.2
complex community Community=arabino-guar; Passage=4 +0.9 +0.0 +0.3 +1.0 +0.1
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