Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6595 and GFF6596 overlap by 23 nucleotidesGFF6596 and GFF6597 are separated by 1 nucleotidesGFF6597 and GFF6598 are separated by 717 nucleotidesGFF6598 and GFF6599 are separated by 82 nucleotides GFF6595 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 38,580 to 40,082 GFF6595 GFF6596 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 40,060 to 41,175 GFF6596 GFF6597 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 41,177 to 42,478 GFF6597 GFF6598 - Putative formate dehydrogenase oxidoreductase protein, at 43,196 to 45,472 GFF6598 GFF6599 - NAD-dependent formate dehydrogenase alpha subunit, at 45,555 to 45,800 GFF6599
Group Condition GFF6595 GFF6596 GFF6597 GFF6598 GFF6599
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 -0.5 -0.1 -0.2 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.2 -0.2 +0.1 -0.9
vitamin M9 with Supernatant from Cyptococcus -0.4 -0.3 -0.2 +0.1 -0.2
complex community Community=guar; Passage=4 +0.2 -0.6 -0.6 -0.0 +0.1
complex community Community=Locust bean gum; Passage=4 -0.1 +0.0 -0.8 +0.3 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.1 +0.1 -0.1 -0.3
complex community Community=guar; Passage=4 +0.1 -0.0 -0.8 -0.2 +0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 -0.0 -0.5 -0.0 +0.1
complex community Community=Locust bean gum; Passage=4 +0.1 -0.0 -0.8 +0.0 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 -0.2 +0.5 -0.1 -0.5
phage phage_bap4 +0.1 -0.5 -0.2 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 -0.1 -0.4 -0.0 +0.3 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.4 -0.0 +0.3 +0.1 -0.3
complex community Community=Locust bean gum; Passage=4 +0.4 +0.2 -1.1 +0.3 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 -0.4 +0.3 +0.1 -0.2
phage phage_bap4 +0.0 -0.0 -0.4 -0.1 +0.3
phage phage_bap4 +0.3 -0.3 -0.3 -0.1 +0.3
phage phage_bap4 +0.3 +0.2 -0.1 -0.3 +0.1
phage phage_bap4 +0.2 +0.0 -0.5 +0.1 +0.4
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.2 +0.2 +0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 -0.2 +0.3 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.0 +0.1 +0.3 +0.2 -0.3
complex community Community=arabino-guar; Passage=4 +0.3 +0.7 +0.0 +0.1 -0.6
phage phage_bap4 +0.4 +0.1 -0.1 -0.1 +0.3
complex community Community=arabino-guar; Passage=4 -0.0 -0.2 -0.1 +0.3 +0.6
no phage control no phage control +0.3 +0.2 +0.4 +0.0 -0.2
complex community Community=Kojac gum; Passage=4 +0.4 +0.1 +0.3 -0.0 -0.1
complex community Community=guar; Passage=4 -0.2 +0.5 +0.1 +0.1 +0.2
complex community Community=guar; Passage=4 +0.6 +0.0 -0.1 +0.0 +0.9
complex community Community=arabino-guar; Passage=4 -0.1 +0.3 +0.9 +0.0 +0.3
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