Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6579 and GFF6580 overlap by 4 nucleotidesGFF6580 and GFF6581 overlap by 4 nucleotidesGFF6581 and GFF6582 are separated by 217 nucleotidesGFF6582 and GFF6583 are separated by 24 nucleotides GFF6579 - Conjugative transfer protein TrbB, at 20,176 to 21,213 GFF6579 GFF6580 - CopG domain-containing protein, at 21,210 to 21,674 GFF6580 GFF6581 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 21,671 to 23,680 GFF6581 GFF6582 - Conjugative transfer protein TrbK, at 23,898 to 24,125 GFF6582 GFF6583 - Transcriptional regulator, LysR family, at 24,150 to 25,064 GFF6583
Group Condition GFF6579 GFF6580 GFF6581 GFF6582 GFF6583
complex community Community=arabino-guar; Passage=4 -2.8 -0.7 -0.2 N.D. +0.0
complex community Community=guar; Passage=4 -0.6 -0.6 -0.1 N.D. -0.6
complex community Community=Kojac gum; Passage=4 -0.7 -0.7 -0.8 N.D. +0.3
complex community Community=Locust bean gum; Passage=4 +0.1 -0.2 -0.8 N.D. -0.8
complex community Community=arabino-guar; Passage=4 -1.3 +0.1 -0.3 N.D. -0.2
complex community Community=arabino-guar; Passage=4 -0.0 -0.9 -0.7 N.D. +0.1
complex community Community=guar; Passage=4 -0.6 -0.0 -0.7 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 +0.6 -1.8 -0.2 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.5 -0.4 -0.2 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.5 -0.2 -0.1 N.D. -0.2
complex community Community=Locust bean gum; Passage=4 -0.0 -0.2 -0.6 N.D. -0.3
complex community Community=arabino-guar; Passage=4 -0.9 +0.7 -0.6 N.D. +0.2
complex community Community=guar; Passage=4 +0.5 -0.2 +0.1 N.D. -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.3 +0.2 N.D. -0.2
phage phage_bap4 -0.2 -0.1 +0.3 N.D. -0.1
vitamin M9 with Supernatant from Cyptococcus -0.3 +0.2 -0.1 N.D. +0.1
complex community Community=Kojac gum; Passage=1 -0.2 -0.1 +0.2 N.D. +0.2
no phage control no phage control +0.4 -0.2 +0.1 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 +0.1 -0.1 N.D. -0.3
complex community Community=guar; Passage=4 +0.6 -1.0 +0.2 N.D. +0.5
complex community Community=Locust bean gum; Passage=1 +0.1 +0.2 -0.2 N.D. +0.1
no phage control no phage control +0.4 -0.2 -0.1 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 +0.1 -0.3 N.D. +0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.5 -0.1 -0.2 N.D. +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.4 -0.1 -0.1 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 +0.2 -0.2 N.D. +0.0
phage phage_bap4 +0.5 +0.1 +0.1 N.D. -0.1
phage phage_bap4 +0.4 +0.3 +0.1 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.4 +0.1 N.D. +0.2
complex community Community=Locust bean gum; Passage=4 +0.6 -0.2 +0.0 N.D. +0.5
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