Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6577 and GFF6578 overlap by 4 nucleotidesGFF6578 and GFF6579 overlap by 4 nucleotidesGFF6579 and GFF6580 overlap by 4 nucleotidesGFF6580 and GFF6581 overlap by 4 nucleotides GFF6577 - Conjugative transfer protein TrbD, at 19,533 to 19,805 GFF6577 GFF6578 - Conjugative transfer protein TrbC, at 19,802 to 20,179 GFF6578 GFF6579 - Conjugative transfer protein TrbB, at 20,176 to 21,213 GFF6579 GFF6580 - CopG domain-containing protein, at 21,210 to 21,674 GFF6580 GFF6581 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 21,671 to 23,680 GFF6581
Group Condition GFF6577 GFF6578 GFF6579 GFF6580 GFF6581
complex community Community=arabino-guar; Passage=4 N.D. N.D. -2.8 -0.7 -0.2
complex community Community=Kojac gum; Passage=4 N.D. N.D. -0.7 -0.7 -0.8
complex community Community=arabino-guar; Passage=4 N.D. N.D. -0.0 -0.9 -0.7
complex community Community=arabino-guar; Passage=4 N.D. N.D. -1.3 +0.1 -0.3
complex community Community=guar; Passage=4 N.D. N.D. -0.6 -0.6 -0.1
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.6 -1.8 -0.2
complex community Community=guar; Passage=4 N.D. N.D. -0.6 -0.0 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. N.D. -0.5 -0.4 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. N.D. -0.5 -0.2 -0.1
complex community Community=Locust bean gum; Passage=4 N.D. N.D. -0.0 -0.2 -0.6
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.1 -0.2 -0.8
complex community Community=arabino-guar; Passage=4 N.D. N.D. -0.9 +0.7 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. -0.1 -0.5 -0.1
complex community Community=guar; Passage=4 N.D. N.D. +0.6 -1.0 +0.2
phage phage_bap4 N.D. N.D. -0.2 -0.1 +0.3
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. +0.3 -0.3 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. N.D. +0.1 -0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. +0.3 +0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. N.D. +0.5 -0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. N.D. +0.4 -0.1 -0.1
no phage control no phage control N.D. N.D. +0.4 -0.2 -0.1
no phage control no phage control N.D. N.D. +0.4 -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. +0.4 +0.1 -0.1
complex community Community=guar; Passage=4 N.D. N.D. +0.5 -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. +0.4 -0.1 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.6 -0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. N.D. +0.4 +0.2 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. +0.2 +0.4 +0.1
phage phage_bap4 N.D. N.D. +0.5 +0.1 +0.1
phage phage_bap4 N.D. N.D. +0.4 +0.3 +0.1
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