Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00320 and PS417_00325 are separated by 28 nucleotidesPS417_00325 and PS417_00330 overlap by 35 nucleotidesPS417_00330 and PS417_00335 are separated by 10 nucleotidesPS417_00335 and PS417_00340 overlap by 13 nucleotides PS417_00320: PS417_00320 - hypothetical protein, at 63,381 to 63,584 _00320 PS417_00325: PS417_00325 - hypothetical protein, at 63,613 to 64,377 _00325 PS417_00330: PS417_00330 - hypothetical protein, at 64,343 to 64,927 _00330 PS417_00335: PS417_00335 - cytochrome B561, at 64,938 to 66,017 _00335 PS417_00340: PS417_00340 - protoheme IX farnesyltransferase, at 66,005 to 66,904 _00340
Group Condition PS417_00320 PS417_00325 PS417_00330 PS417_00335 PS417_00340
soil soil sample 5; outgrowth in LB N.D. -2.0 -1.7 -1.4 -0.5
soil soil sample 7; outgrowth in LB N.D. -1.4 -2.2 -0.7 +0.3
soil soil sample 6; outgrowth in LB N.D. -0.8 -1.4 -1.6 -0.2
soil soil sample 2; outgrowth in LB N.D. -1.4 -1.2 -1.3 -0.0
soil soil sample 8; outgrowth in LB N.D. -0.7 -1.4 -1.4 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.7 -0.7 -1.6 +0.1
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -0.6 -1.0 -1.0 -0.1
root root sample 6; outgrowth in LB N.D. -0.4 -0.8 -1.7 +0.2
soil soil sample 4; outgrowth in LB N.D. -0.4 -1.2 -1.0 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.1 -0.7 -1.6 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.7 +0.2 -0.9 -0.9
soil soil sample 3; outgrowth in LB N.D. -0.2 -0.9 -1.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.7 -0.3 -0.7 -0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -0.2 -1.0 -0.3 -0.6
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.5 -0.2 -0.5 -0.7
agar plate interaction control Taped volatile agar plate with no fungus N.D. -1.7 -0.4 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.6 -0.1 -0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 -0.8 -0.7 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -0.7 +0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.9 +0.2 -0.2 +0.3
seeds Growth on radish seeds for 72 hours N.D. -0.9 +0.6 -0.7 +0.4
solid stress Fraxetin 3 mM; solid stress N.D. -0.7 -0.1 +0.1 +0.5
phage JP1 MOI 0.1 N.D. -0.1 -0.6 -0.3 +0.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +1.0 -0.1 -0.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.1 -0.2 -0.3 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.5 +0.5 +0.3 +0.3
phage P. simiae OR Antrim MOI 10 N.D. +0.9 -0.5 +0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.0 +0.0 -0.1 +1.3
phage JP1 MOI 1 N.D. +0.4 +0.2 +0.1 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.9 +0.5 -0.4 +0.6
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PS417_00320
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PS417_00325
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PS417_00335
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PS417_00340
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