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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF6497 and GFF6498 are separated by 140 nucleotides
GFF6498 and GFF6499 are separated by 5 nucleotides
GFF6499 and GFF6500 are separated by 122 nucleotides
GFF6500 and GFF6501 are separated by 52 nucleotides
GFF6497 - Protein of unknown function (DUF1501), at 73,419 to 74,630
GFF6497
GFF6498 - FIG00348192: hypothetical protein, at 74,771 to 76,363
GFF6498
GFF6499 - hypothetical protein, at 76,369 to 76,848
GFF6499
GFF6500 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 76,971 to 77,657
GFF6500
GFF6501 - Uncharacterized MFS-type transporter, at 77,710 to 79,119
GFF6501
Group
Condition
GFF6497
GFF6498
GFF6499
GFF6500
GFF6501
complex community
Community=Kojac gum; Passage=4
-1.2
+0.1
-0.5
-0.3
-0.2
no phage control
no phage control
-0.1
+0.1
-1.2
-0.2
-0.1
phage
phage_bap4
-0.1
-0.0
-1.1
-0.1
+0.1
phage
phage_bap4
-0.2
-0.1
-0.6
-0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
+0.2
+0.0
-0.5
-0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
-0.1
-0.2
-0.1
+0.1
phage
phage_bap4
-0.2
+0.2
-0.7
+0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.2
+0.2
-0.3
+0.1
phage
phage_bap4
+0.2
-0.0
-0.2
-0.4
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
-0.4
+0.0
+0.2
complex community
Community=arabino-guar; Passage=4
-0.5
-0.2
+0.3
+0.2
-0.1
complex community
Community=guar; Passage=4
-0.4
+0.3
-0.0
-0.0
-0.2
complex community
Community=guar; Passage=4
+0.3
+0.3
-0.9
-0.0
+0.2
complex community
Community=Locust bean gum; Passage=1
-0.2
-0.1
+0.4
-0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.2
+0.5
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.0
+0.2
-0.2
+0.2
complex community
Community=arabino-guar; Passage=4
+0.1
+0.3
-0.4
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.1
+0.3
-0.2
+0.1
complex community
Community=arabino-guar; Passage=4
-0.3
+0.3
+0.7
-0.0
-0.4
complex community
Community=guar; Passage=4
+0.1
-0.0
+0.6
+0.0
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
+0.2
+0.4
+0.1
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
-0.0
+0.5
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
+0.2
+0.5
-0.0
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.1
+0.8
-0.1
-0.0
complex community
Community=arabino-guar; Passage=4
-0.3
+0.5
+0.7
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.2
+0.7
-0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.0
+0.8
-0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.0
+1.0
-0.0
-0.1
complex community
Community=guar; Passage=4
+0.2
+0.0
+1.0
+0.2
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.6
+0.3
+0.1
+0.4
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