Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03280	PS417_03285	PS417_03290	PS417_03295	PS417_03300
stress	Cisplatin 0.01 mg/ml	-0.9	-0.9	-1.0	N.D.	-1.6
phage	P. simiae OR Antrim MOI 10	-0.4	-1.1	-0.2	N.D.	-2.4
solid stress	Fraxetin 3 mM; solid stress	-0.1	-0.7	+0.0	N.D.	-2.9
phage	P. simiae OR Antrim MOI 1	-0.5	-0.8	-0.7	N.D.	-1.3
phage	P. simiae OR Antrim MOI 1	-0.1	-0.3	-0.4	N.D.	-2.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.1	-0.6	-0.2	N.D.	-2.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.2	-0.3	N.D.	-2.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.8	-0.5	N.D.	-1.2
liquid stress	Fraxetin 2 mM; liquid stress	-0.1	-0.3	-0.1	N.D.	-1.8
phage	P. simiae Grant Run MOI 0.1	-0.3	-0.5	-0.1	N.D.	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	-0.4	-0.3	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.2	-0.4	N.D.	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-0.5	N.D.	-1.4
solid stress	80% Methanol 3 mM; solid stress	-0.5	-0.2	-0.4	N.D.	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.4	-0.1	N.D.	-1.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	-0.2	-0.2	N.D.	-1.4
carbon source	Carbon source D-Mannitol 5 mM	-0.2	-0.5	+0.1	N.D.	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.4	-0.4	N.D.	-0.9
seeds	Growth on radish seeds for 72 hours	+0.2	-0.7	-0.1	N.D.	-0.8
liquid stress	Scopoletin 3 mM; liquid stress	-0.0	+0.1	+0.1	N.D.	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.4	+0.3	N.D.	-1.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	-0.0	-0.3	N.D.	-1.5
stress	methylglyoxal 0.032 vol%	-0.0	+0.4	-0.1	N.D.	-1.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.1	+0.6	N.D.	-1.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.2	+0.6	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.4	-0.5	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.7	-0.1	N.D.	-1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.4	+0.6	N.D.	-1.2
nophagecontrol	Only library	-0.1	-1.0	-0.1	N.D.	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+1.3	+0.2	N.D.	-0.2