Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6468 and GFF6469 overlap by 4 nucleotidesGFF6469 and GFF6470 overlap by 4 nucleotidesGFF6470 and GFF6471 overlap by 13 nucleotidesGFF6471 and GFF6472 are separated by 91 nucleotides GFF6468 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 45,262 to 46,230 GFF6468 GFF6469 - TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter, at 46,227 to 46,721 GFF6469 GFF6470 - TRAP-type C4-dicarboxylate transport system, large permease component, at 46,718 to 47,995 GFF6470 GFF6471 - Transcriptional regulator, AraC family, at 47,983 to 48,771 GFF6471 GFF6472 - membrane efflux protein, at 48,863 to 50,056 GFF6472
Group Condition GFF6468 GFF6469 GFF6470 GFF6471 GFF6472
complex community Community=guar; Passage=4 -0.5 -0.7 -0.1 -0.6 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.7 -0.0 -0.2 -0.0
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.1 -0.7 -0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.4 -0.5 -0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.7 -0.1 -0.0 +0.0
complex community Community=arabino-guar; Passage=4 -0.1 +0.0 -0.4 -0.7 +0.2
complex community Community=Locust bean gum; Passage=4 +0.3 -0.5 +0.1 -1.0 +0.2
complex community Community=guar; Passage=4 -0.1 -1.2 -0.1 -0.1 +0.5
complex community Community=arabino-guar; Passage=4 +0.4 -0.1 -0.5 -0.5 -0.1
complex community Community=arabino-guar; Passage=4 -0.5 -0.4 -0.1 -0.2 +0.6
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.3 -0.4 +0.2 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.5 -0.2 +0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.0 -0.4 -0.2 +0.2 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.3 -0.4 -0.2 +0.6 +0.1
phage phage_bap4 -0.2 -0.4 +0.3 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.5 +0.1 -0.1 +0.3 +0.1
complex community Community=guar; Passage=4 +0.9 -0.5 -0.4 -0.3 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.4 -0.2 +0.3 +0.1
complex community Community=guar; Passage=4 +0.4 -0.2 -0.5 +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.3 +0.1 +0.4 +0.1
no phage control no phage control +0.6 -0.1 +0.1 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 -0.3 +0.2 +0.4 +0.2
no phage control no phage control +0.3 -0.2 +0.0 +0.4 -0.0
phage phage_bap4 +0.3 -0.1 -0.1 +0.3 +0.1
complex community Community=Locust bean gum; Passage=4 +0.7 -0.4 -0.1 +0.0 +0.2
complex community Community=arabino-guar; Passage=4 +0.6 -0.4 -0.4 +0.7 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 -0.1 +0.0 +0.4 +0.1
complex community Community=Kojac gum; Passage=4 +0.2 +0.0 +0.1 +0.5 +0.3
complex community Community=Locust bean gum; Passage=4 +0.4 +0.0 +0.1 +0.7 +0.1
complex community Community=Locust bean gum; Passage=4 +1.0 +0.6 -0.0 +0.5 -0.0
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