Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6459 and GFF6460 overlap by 4 nucleotidesGFF6460 and GFF6461 are separated by 14 nucleotidesGFF6461 and GFF6462 overlap by 4 nucleotidesGFF6462 and GFF6463 are separated by 11 nucleotides GFF6459 - Two-component transcriptional regulatory protein BasR/PmrA (activated by BasS/PmrB), at 36,706 to 37,380 GFF6459 GFF6460 - Sensor protein BasS/PmrB (activates BasR/PmrA), at 37,377 to 38,732 GFF6460 GFF6461 - Thioesterase superfamily, at 38,747 to 39,169 GFF6461 GFF6462 - Integral membrane protein, at 39,166 to 40,065 GFF6462 GFF6463 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 40,077 to 40,859 GFF6463
Group Condition GFF6459 GFF6460 GFF6461 GFF6462 GFF6463
complex community Community=Kojac gum; Passage=4 -0.2 -0.3 -0.4 -0.6 -0.1
complex community Community=Locust bean gum; Passage=4 -1.7 +0.3 +0.0 +0.1 +0.0
complex community Community=guar; Passage=4 -0.7 -0.2 -0.1 +0.4 -0.7
complex community Community=guar; Passage=4 -0.5 -0.2 -0.5 +0.4 -0.4
complex community Community=arabino-guar; Passage=4 +0.3 -0.2 +0.3 -0.2 -1.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.2 -0.0 -0.2 -0.3
phage phage_bap4 -0.4 -0.1 -0.1 -0.1 -0.0
complex community Community=Locust bean gum; Passage=1 -0.6 -0.3 +0.1 -0.1 +0.2
complex community Community=Locust bean gum; Passage=4 -0.0 -0.4 +0.1 -0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.0 +0.0 -0.3 +0.0
phage phage_bap4 +0.2 -0.3 -0.1 -0.1 -0.0
complex community Community=Locust bean gum; Passage=4 -0.2 -0.3 +0.2 +0.1 -0.2
phage phage_bap4 -0.4 -0.0 +0.1 +0.1 -0.2
phage phage_bap4 -0.0 -0.1 +0.1 +0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.1 -0.2 -0.2 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.2 -0.2 -0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.2 +0.1 +0.0 -0.1
phage phage_bap4 -0.3 -0.1 +0.1 -0.0 +0.2
complex community Community=arabino-guar; Passage=4 +0.7 +0.2 -0.2 -0.2 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.3 +0.0 -0.1 -0.0 -0.2
phage phage_bap4 -0.2 -0.1 +0.3 -0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.3 -0.1 -0.0 -0.4 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 -0.1 +0.1 -0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 +0.1 -0.1 -0.1 -0.0
complex community Community=guar; Passage=4 -0.0 -0.1 -0.2 +0.6 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.5 -0.0 -0.0 -0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 -0.1 +0.1 -0.0 +0.1
complex community Community=arabino-guar; Passage=4 +1.0 +0.1 -0.4 +0.0 -0.1
complex community Community=guar; Passage=4 +0.5 -0.0 -0.3 +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.7 +0.2 +0.1 +0.1 -0.1
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