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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF643 and GFF644 are separated by 95 nucleotides
GFF644 and GFF645 are separated by 15 nucleotides
GFF645 and GFF646 are separated by 11 nucleotides
GFF646 and GFF647 are separated by 148 nucleotides
GFF643 - no description, at 694,149 to 694,358
GFF643
GFF644 - ABC transporter, substrate-binding protein (cluster 6, sulfate/molybdate/tungstate/phosphate), at 694,454 to 695,275
GFF644
GFF645 - hypothetical protein, at 695,291 to 696,193
GFF645
GFF646 - no description, at 696,205 to 696,552
GFF646
GFF647 - Two-component system response regulator QseB, at 696,701 to 697,390
GFF647
Group
Condition
GFF643
GFF644
GFF645
GFF646
GFF647
complex community
Community=arabino-guar; Passage=4
-0.2
+0.4
-0.2
-2.6
-0.8
complex community
Community=guar; Passage=4
-3.0
+0.3
+0.0
+0.0
-0.5
complex community
Community=guar; Passage=4
+0.3
-0.1
-0.5
-2.1
-0.5
complex community
Community=Locust bean gum; Passage=4
-0.7
+0.1
-0.1
-1.7
-0.1
phage
phage_bap4
-0.8
+0.0
+0.0
-0.8
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.7
-0.1
-0.3
-0.4
-0.0
complex community
Community=arabino-guar; Passage=4
+0.5
-0.2
-0.3
-1.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.2
-0.2
+0.2
+0.4
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.9
-0.2
+0.2
-0.3
+0.2
phage
phage_bap4
-0.9
-0.0
+0.1
-0.5
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.8
+0.1
-0.3
+0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.3
-0.2
-0.2
-0.7
+0.1
phage
phage_bap4
-0.1
-0.2
-0.0
-0.6
+0.3
complex community
Community=arabino-guar; Passage=4
-1.2
+0.2
+0.0
-0.3
+0.6
no phage control
no phage control
+0.1
+0.0
+0.0
-0.8
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.8
-0.1
-0.2
-0.8
-0.2
no phage control
no phage control
+0.5
-0.0
-0.0
-0.7
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.6
-0.0
-0.2
+0.6
-0.0
complex community
Community=Locust bean gum; Passage=1
-0.9
+0.1
+0.1
+0.5
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.7
-0.0
+0.0
+0.5
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.2
+0.1
+1.0
-0.8
complex community
Community=Kojac gum; Passage=4
-1.5
-0.0
+0.5
+1.6
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
-0.3
+0.0
+0.5
-0.3
phage
phage_bap4
+0.5
+0.1
-0.4
-0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.1
-0.4
+0.7
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.5
+0.1
-0.1
+0.4
-0.1
complex community
Community=guar; Passage=4
-0.2
-0.1
+0.0
+1.2
-0.1
complex community
Community=arabino-guar; Passage=4
+1.0
-0.0
-0.0
-0.4
+0.2
phage
phage_bap4
+0.6
+0.2
+0.2
-0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.4
+0.2
+0.9
+0.7
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