Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03245	PS417_03250	PS417_03255	PS417_03260	PS417_03265
nitrogen source	Uridine (N)	-3.6	-0.3	N.D.	-0.1	+0.1
soil	soil sample 8; outgrowth in LB	-0.4	-0.2	N.D.	-3.2	+0.2
solid stress	80% Methanol 0.5 mM; solid stress	-0.2	-0.0	N.D.	-3.0	-0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.3	-0.2	N.D.	-2.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.1	N.D.	-3.4	-0.1
solid stress	80% Methanol 3 mM; solid stress	-0.2	-0.0	N.D.	-3.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	N.D.	-3.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.2	N.D.	-3.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.0	N.D.	-3.5	-0.0
soil	soil sample 4; outgrowth in LB	-0.7	-0.0	N.D.	-3.1	+0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	+0.1	N.D.	-3.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.0	N.D.	-3.5	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.2	N.D.	-3.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.1	N.D.	-3.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	+0.1	N.D.	-3.4	+0.1
solid stress	Scopoletin 0.5 mM; solid stress	+0.2	-0.1	N.D.	-3.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.0	+0.2	N.D.	-3.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	N.D.	-3.4	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.1	N.D.	-3.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.0	N.D.	-3.4	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.3	N.D.	-3.0	+0.0
solid stress	Scopoletin 2 mM; solid stress	+0.1	-0.0	N.D.	-3.0	+0.2
supernatant control	Vogels_fungal_media 0.1X	+0.1	+0.4	N.D.	-2.6	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.0	N.D.	-2.8	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.0	N.D.	-2.8	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.1	N.D.	-2.7	+1.2
stress	Nalidixic 0.025 mg/ml	+0.1	+0.1	N.D.	+2.7	-0.6
stress	Doxycycline hyclate 0.001 mg/ml	+0.2	+0.2	N.D.	+2.9	-0.8
stress	Neomycin 0.04 mg/ml	+0.1	-0.1	N.D.	+3.0	+2.6
stress	Gentamicin 0.008 mg/ml	-0.1	+0.1	N.D.	+6.7	+0.6