Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03220 and PS417_03225 are separated by 35 nucleotidesPS417_03225 and PS417_03230 are separated by 12 nucleotidesPS417_03230 and PS417_03235 are separated by 87 nucleotidesPS417_03235 and PS417_03240 are separated by 88 nucleotides PS417_03220: PS417_03220 - short-chain dehydrogenase, at 736,447 to 737,133 _03220 PS417_03225: PS417_03225 - thymidylate synthase, at 737,169 to 737,750 _03225 PS417_03230: PS417_03230 - TetR family transcriptional regulator, at 737,763 to 738,422 _03230 PS417_03235: PS417_03235 - xanthine permease XanP, at 738,510 to 739,904 _03235 PS417_03240: PS417_03240 - LysR family transcriptional regulator, at 739,993 to 740,913 _03240
Group Condition PS417_03220 PS417_03225 PS417_03230 PS417_03235 PS417_03240
nitrogen source Uridine (N) N.D. -0.0 -0.0 -0.1 -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -1.3 -0.1 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 -1.5 +0.1 -0.5
seeds Growth on radish seeds for 72 hours N.D. -0.4 -0.6 +0.3 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.8 -0.0 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.8 -0.5 -0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -0.9 -0.3 +0.3
seeds Growth on radish seeds for 72 hours N.D. -0.6 -0.3 +0.1 -0.4
carbon source m-Inositol (C) N.D. -0.2 -0.1 +0.0 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -0.9 -0.2 +0.1
stress Gentamicin 0.008 mg/ml N.D. -0.3 +0.2 +0.2 -1.2
stress methylglyoxal 0.032 vol% N.D. -1.6 +0.1 +0.3 +0.2
phage JP1 MOI 1 N.D. +0.1 -0.7 -0.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.6 -0.7 -0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.3 -0.7 +0.2 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.6 -1.1 -0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.6 +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.0 -0.9 +0.0 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 -1.0 -0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 -0.7 -0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -0.6 +0.2 +0.4
phage P. simiae OR Antrim MOI 1 N.D. -0.1 -0.6 +0.2 +0.5
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.6 -0.3 +0.1 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.7 +0.4 +0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.1 -0.5 -0.0 +0.8
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.3 +0.4 +0.2 +0.5
phage P. simiae OR1 MOI 0.1 N.D. +0.7 -0.2 +0.5 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.5 +0.8 +0.2 -0.1
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.4 +0.8 -0.1 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.6 +0.3 +0.4 +0.4
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