Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6265 and GFF6266 are separated by 21 nucleotidesGFF6266 and GFF6267 are separated by 64 nucleotidesGFF6267 and GFF6268 are separated by 98 nucleotidesGFF6268 and GFF6269 are separated by 28 nucleotides GFF6265 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 56,709 to 57,665 GFF6265 GFF6266 - putative lipoprotein, at 57,687 to 58,367 GFF6266 GFF6267 - Transcriptional regulator, LysR family, at 58,432 to 59,328 GFF6267 GFF6268 - BUG/TctC family periplasmic protein, at 59,427 to 60,446 GFF6268 GFF6269 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 60,475 to 62,187 GFF6269
Group Condition GFF6265 GFF6266 GFF6267 GFF6268 GFF6269
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.3 N.D. -0.3 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.3 N.D. -0.2 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.5 N.D. +0.3 -0.1
vitamin M9 with Supernatant from Cyptococcus N.D. -0.4 N.D. +0.1 -0.1
complex community Community=Locust bean gum; Passage=4 N.D. +0.0 N.D. -0.4 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.5 N.D. +0.1 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.3 N.D. -0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus N.D. -0.4 N.D. +0.1 -0.0
complex community Community=guar; Passage=4 N.D. +0.3 N.D. -0.7 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.3 N.D. +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus N.D. +0.5 N.D. -0.5 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.2 N.D. +0.2 +0.0
complex community Community=guar; Passage=4 N.D. +0.5 N.D. -0.4 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.1 N.D. +0.2 +0.1
complex community Community=Kojac gum; Passage=4 N.D. +0.8 N.D. -0.6 +0.0
vitamin M9 with Supernatant from Cyptococcus N.D. +0.2 N.D. +0.3 -0.1
phage phage_bap4 N.D. +0.2 N.D. +0.3 -0.1
complex community Community=guar; Passage=4 N.D. +0.3 N.D. +0.1 +0.1
no phage control no phage control N.D. +0.3 N.D. +0.1 +0.1
no phage control no phage control N.D. +0.2 N.D. +0.2 +0.1
phage phage_bap4 N.D. +0.1 N.D. +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.3 N.D. +0.2 +0.1
complex community Community=arabino-guar; Passage=4 N.D. -0.2 N.D. +0.6 +0.2
complex community Community=guar; Passage=4 N.D. +0.2 N.D. +0.5 -0.0
complex community Community=arabino-guar; Passage=4 N.D. +0.4 N.D. -0.1 +0.4
phage phage_bap4 N.D. +0.5 N.D. +0.1 +0.1
phage phage_bap4 N.D. +0.3 N.D. +0.4 +0.0
complex community Community=Locust bean gum; Passage=4 N.D. -0.2 N.D. +0.8 +0.2
complex community Community=Locust bean gum; Passage=4 N.D. +0.1 N.D. +0.6 +0.1
phage phage_bap4 N.D. +0.4 N.D. +0.3 +0.1
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