Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00305	PS417_00310	PS417_00315	PS417_00320	PS417_00325
soil	soil sample 2; outgrowth in LB	-1.2	-2.5	-1.5	N.D.	-1.4
soil	soil sample 7; outgrowth in LB	-0.9	-1.6	-2.1	N.D.	-1.4
soil	soil sample 6; outgrowth in LB	-1.3	-1.7	-2.1	N.D.	-0.8
soil	soil sample 5; outgrowth in LB	-1.3	-1.0	-1.2	N.D.	-2.0
soil	soil sample 8; outgrowth in LB	-1.4	-1.3	-1.4	N.D.	-0.7
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-2.1	-0.1	N.D.	-1.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.9	-1.2	-1.2	N.D.	-0.7
rhizosphere	rhizosphere sample 8; outgrowth in LB	-1.1	-0.9	-1.0	N.D.	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.1	-0.5	-1.7	N.D.	-0.1
root	root sample 6; outgrowth in LB	-1.0	-1.0	-0.5	N.D.	-0.4
soil	soil sample 3; outgrowth in LB	-1.1	-0.7	-0.7	N.D.	-0.2
soil	soil sample 4; outgrowth in LB	-1.4	+0.4	-1.1	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-0.5	-1.1	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.5	-0.5	N.D.	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	-0.7	-0.7	-0.1	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.3	-0.7	N.D.	+0.1
seeds	Growth on radish seeds for 72 hours	+0.1	-0.2	-0.4	N.D.	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.3	-0.3	N.D.	-0.9
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.2	-0.5	N.D.	-0.8
carbon source	2'-Deoxyinosine 5 mM (C)	-0.6	-0.3	+0.2	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.2	-0.7	N.D.	-0.6
stress	Gentamicin 0.008 mg/ml	-0.3	+0.5	-0.4	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.6	+0.8	N.D.	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	-0.9	-0.0	N.D.	+1.0
carbon source	L-Valine (C)	+0.2	-0.1	+1.1	N.D.	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	-0.0	+1.2	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	-0.2	+0.2	N.D.	+1.1
phage	P. simiae Grant Run MOI 10	+0.3	+0.6	+0.3	N.D.	+0.3
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.1	+0.4	+0.6	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.8	+0.8	N.D.	+0.9