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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF6181 and GFF6182 are separated by 19 nucleotides
GFF6182 and GFF6183 are separated by 29 nucleotides
GFF6183 and GFF6184 are separated by 6 nucleotides
GFF6184 and GFF6185 overlap by 4 nucleotides
GFF6181 - Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43), at 86,524 to 87,414
GFF6181
GFF6182 - Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51), at 87,434 to 88,558
GFF6182
GFF6183 - Phosphoserine aminotransferase (EC 2.6.1.52), at 88,588 to 89,718
GFF6183
GFF6184 - hypothetical protein, at 89,725 to 90,300
GFF6184
GFF6185 - DNA gyrase subunit A (EC 5.99.1.3), at 90,297 to 92,942
GFF6185
Group
Condition
GFF6181
GFF6182
GFF6183
GFF6184
GFF6185
complex community
Community=arabino-guar; Passage=4
N.D.
-2.5
N.D.
-3.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
-3.3
N.D.
-1.5
N.D.
complex community
Community=Locust bean gum; Passage=4
N.D.
-2.1
N.D.
-2.3
N.D.
complex community
Community=Locust bean gum; Passage=4
N.D.
-2.3
N.D.
-1.7
N.D.
complex community
Community=guar; Passage=4
N.D.
-2.7
N.D.
-1.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
N.D.
-2.4
N.D.
-1.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
-3.2
N.D.
-0.5
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
-3.6
N.D.
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
-3.2
N.D.
-0.4
N.D.
complex community
Community=Locust bean gum; Passage=4
N.D.
-2.4
N.D.
-1.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
N.D.
-3.5
N.D.
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
-3.7
N.D.
+0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus
N.D.
-3.4
N.D.
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
-3.2
N.D.
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
-2.9
N.D.
-0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
-3.1
N.D.
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
N.D.
-3.3
N.D.
+0.1
N.D.
complex community
Community=arabino-guar; Passage=4
N.D.
-2.4
N.D.
-0.8
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
-3.4
N.D.
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
N.D.
-3.4
N.D.
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
-3.2
N.D.
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
N.D.
-3.4
N.D.
+0.4
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
N.D.
-3.1
N.D.
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
-3.0
N.D.
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
N.D.
-3.4
N.D.
+0.5
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
N.D.
-3.4
N.D.
+0.7
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
-3.3
N.D.
+0.6
N.D.
vitamin
M9 with Supernatant from Cyptococcus
N.D.
-2.8
N.D.
+0.7
N.D.
vitamin
M9 with Supernatant from Cyptococcus
N.D.
-2.6
N.D.
+1.0
N.D.
complex community
Community=guar; Passage=4
N.D.
-2.6
N.D.
+1.0
N.D.
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