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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF6145 and GFF6146 are separated by 1 nucleotides
GFF6146 and GFF6147 are separated by 23 nucleotides
GFF6147 and GFF6148 are separated by 6 nucleotides
GFF6148 and GFF6149 are separated by 38 nucleotides
GFF6145 - 2-aminoethylphosphonate utilization transcriptional regulator, GntR family, at 49,531 to 50,259
GFF6145
GFF6146 - Phosphonoacetate hydrolase (EC 3.11.1.2), at 50,261 to 51,487
GFF6146
GFF6147 - Phosphonoacetaldehyde dehydrogenase (NAD+), at 51,511 to 52,959
GFF6147
GFF6148 - hypothetical protein, at 52,966 to 53,532
GFF6148
GFF6149 - FAD-dependent oxidoreductase, at 53,571 to 54,959
GFF6149
Group
Condition
GFF6145
GFF6146
GFF6147
GFF6148
GFF6149
complex community
Community=Locust bean gum; Passage=4
-2.7
+0.6
+0.2
-0.9
+0.6
complex community
Community=guar; Passage=4
-1.4
+0.3
+0.1
-1.1
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
-0.1
-0.4
-0.4
-0.0
complex community
Community=Kojac gum; Passage=4
-1.4
+0.4
+0.0
-0.4
+0.2
complex community
Community=guar; Passage=4
-0.6
+0.2
-0.3
-0.5
+0.1
phage
phage_bap4
-0.4
+0.1
-0.1
-0.6
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.2
-0.3
-0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.6
+0.2
-0.1
-0.5
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
+0.1
-0.4
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
+0.2
-0.2
-0.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
+0.1
+0.1
-0.5
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.7
+0.3
-0.1
-0.2
+0.1
complex community
Community=arabino-guar; Passage=4
-0.7
-0.3
+0.1
-0.3
+0.6
complex community
Community=arabino-guar; Passage=4
-1.4
-0.4
+0.6
+1.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.7
+0.1
+0.3
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.5
+0.4
-0.1
+0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
+0.2
+0.2
+0.2
-0.2
no phage control
no phage control
+0.1
+0.0
+0.2
-0.7
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.6
+0.3
+0.1
+0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.5
+0.2
-0.0
+0.5
-0.0
phage
phage_bap4
+0.5
+0.0
+0.2
-0.4
-0.1
complex community
Community=arabino-guar; Passage=4
-1.2
+0.1
+0.4
+1.0
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.5
+0.2
+0.5
+0.7
-0.2
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.4
+0.1
+0.5
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.1
-0.0
+1.6
-0.2
complex community
Community=guar; Passage=4
-2.2
+0.4
+1.3
+1.1
+0.6
vitamin
M9 with Supernatant from Cyptococcus
+0.4
+0.2
+0.2
+0.3
+0.0
complex community
Community=arabino-guar; Passage=4
-0.7
+0.7
-0.1
+0.8
+0.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
+0.5
+0.0
+0.7
+0.2
complex community
Community=guar; Passage=4
-0.5
+0.8
+0.4
+0.9
+0.6
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