Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03090	PS417_03095	PS417_03100	PS417_03105	PS417_03110
phage	P. simiae Grant Run MOI 10	-0.3	-0.4	-3.5	+0.3	+0.2
phage	P. simiae OR1 MOI 0.1	+0.0	+0.3	-3.5	+0.0	-0.2
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.3	-0.2	-2.4	+0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.4	-3.5	+0.4	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.1	-3.1	+0.1	-0.1
stress	methylglyoxal 0.032 vol%	+0.1	+0.5	-2.9	-0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.1	-2.5	+0.3	-0.4
carbon source	succinate (C)	+0.1	-0.4	-2.1	-0.1	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.5	-0.7	-2.0	-0.7	+0.5
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	+0.0	-2.2	-0.0	+0.1
no phage control	Time6-nophage	+0.2	+0.1	-2.3	-0.0	+0.0
phage	JP1 MOI 1	+0.1	+0.4	-2.6	-0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.1	-1.9	-0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.7	-2.5	-0.1	-0.0
seeds	Growth on radish seeds for 72 hours	+0.1	-0.6	-1.4	+1.0	-0.1
phage	P. simiae OR Antrim MOI 10	-0.1	-0.4	+1.3	+0.7	+0.1
carbon source	L-Valine (C)	+0.5	-0.2	+1.9	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.5	+1.6	-0.3	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	+0.3	+0.8	+0.4	+0.7
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.7	+0.1	+1.3	+0.3	+0.4
soil	soil sample 5; outgrowth in LB	+0.4	+0.4	+1.0	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.8	-0.1	+0.9	+0.5
soil	soil sample 6; outgrowth in LB	+0.7	+0.3	+1.3	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.5	+1.1	-0.5	+1.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.4	+1.3	+0.2	+0.8	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.9	+1.2	+0.6	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+1.2	+1.5	+1.0	+0.6
root	root sample 6; outgrowth in LB	+1.6	+1.5	-0.6	+1.7	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.5	+1.0	+1.0	+1.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.2	+1.5	+1.1	+1.4	+0.5