Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6088 and GFF6089 are separated by 149 nucleotidesGFF6089 and GFF6090 are separated by 3 nucleotidesGFF6090 and GFF6091 overlap by 4 nucleotidesGFF6091 and GFF6092 are separated by 28 nucleotides GFF6088 - Phenylacetic acid degradation protein PaaY, at 149,385 to 149,987 GFF6088 GFF6089 - 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18), at 150,137 to 150,940 GFF6089 GFF6090 - Acyl-coenzyme A thioesterase PaaD (Pse.pu.) (E. coli PaaI), at 150,944 to 151,402 GFF6090 GFF6091 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 151,399 to 152,709 GFF6091 GFF6092 - Penicillin G acylase precursor (EC 3.5.1.11), at 152,738 to 155,182 GFF6092
Group Condition GFF6088 GFF6089 GFF6090 GFF6091 GFF6092
complex community Community=arabino-guar; Passage=4 +0.4 -0.1 -1.4 +0.0 -0.3
complex community Community=guar; Passage=4 -0.1 -1.0 -0.2 -0.1 +0.2
complex community Community=guar; Passage=4 -0.3 -0.7 +0.2 -0.0 -0.3
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.1 -0.3 -0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 +0.1 -0.5 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.0 -0.3 -0.2 +0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.1 +0.2 -0.4 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.1 -0.2 -0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.2 +0.0 -0.1 -0.1
phage phage_bap4 -0.2 +0.2 -0.2 -0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.1 -0.1 -0.1 +0.2
no phage control no phage control -0.2 -0.1 +0.3 +0.1 -0.2
no phage control no phage control -0.1 -0.1 -0.2 +0.2 +0.0
complex community Community=guar; Passage=4 +0.3 -0.5 -0.1 +0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.0 -0.1 -0.2 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 +0.1 +0.1 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 +0.1 -0.2 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.0 +0.3 -0.2 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.0 -0.2 +0.1 +0.1 +0.1
phage phage_bap4 -0.0 -0.1 +0.3 +0.0 -0.1
complex community Community=arabino-guar; Passage=4 -0.1 +0.1 -0.2 +0.2 +0.1
complex community Community=Kojac gum; Passage=4 +0.1 -0.4 +0.4 -0.1 +0.1
complex community Community=Locust bean gum; Passage=4 -0.1 +0.3 -0.1 +0.4 -0.4
phage phage_bap4 -0.2 +0.1 -0.0 +0.1 +0.2
complex community Community=Locust bean gum; Passage=4 +0.4 +0.5 -0.1 -0.4 -0.2
complex community Community=guar; Passage=4 +0.2 +0.0 -0.1 -0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.2 -0.0 +0.1 +0.2
complex community Community=Locust bean gum; Passage=4 +0.1 +0.6 +0.2 -0.2 -0.3
complex community Community=Locust bean gum; Passage=4 +0.6 +0.2 +0.2 -0.2 -0.1
complex community Community=arabino-guar; Passage=4 -0.0 +0.2 +0.3 +0.1 +0.1
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