Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6057 and GFF6058 are separated by 15 nucleotidesGFF6058 and GFF6059 are separated by 18 nucleotidesGFF6059 and GFF6060 overlap by 11 nucleotidesGFF6060 and GFF6061 overlap by 4 nucleotides GFF6057 - ABC-type Fe3+ transport system, periplasmic component, at 118,876 to 119,886 GFF6057 GFF6058 - ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron), at 119,902 to 120,732 GFF6058 GFF6059 - ABC transporter, permease protein 2 (cluster 1, maltose/g3p/polyamine/iron), at 120,751 to 121,554 GFF6059 GFF6060 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 121,544 to 122,608 GFF6060 GFF6061 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 122,605 to 123,468 GFF6061
Group Condition GFF6057 GFF6058 GFF6059 GFF6060 GFF6061
complex community Community=Locust bean gum; Passage=4 +0.2 -0.3 +0.3 -1.3 -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 -0.1 +0.1 -0.8 -0.4
complex community Community=guar; Passage=4 -0.3 +0.1 +0.2 -0.3 -0.5
no phage control no phage control +0.1 -0.2 -0.0 -0.3 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.2 +0.0 -0.2 -0.2 -0.3
phage phage_bap4 +0.2 -0.1 -0.2 -0.3 +0.0
phage phage_bap4 +0.2 -0.1 -0.1 +0.0 -0.3
vitamin M9 with Supernatant from Cyptococcus -0.0 -0.1 +0.3 -0.5 +0.0
complex community Community=arabino-guar; Passage=4 +0.5 +0.3 +0.1 -1.2 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 -0.1 +0.1 -0.4 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 -0.1 +0.1 -0.2 -0.3
complex community Community=guar; Passage=4 +0.1 -0.4 -0.1 +0.4 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 -0.2 +0.4 -0.3 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.3 -0.2 +0.2 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 -0.1 +0.1 -0.3 +0.0
vitamin M9 with Supernatant from Cyptococcus +0.2 -0.1 +0.0 -0.5 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.0 +0.3 -0.3 -0.1
phage phage_bap4 +0.2 +0.0 -0.2 +0.4 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.3 -0.2 +0.1 +0.3 -0.2
complex community Community=arabino-guar; Passage=4 +0.3 +0.2 +0.2 +0.7 -0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.2 +0.2 +0.3 +0.0
complex community Community=Locust bean gum; Passage=4 +0.2 +0.8 -0.2 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.1 +0.2 +0.5 +0.1
complex community Community=Locust bean gum; Passage=4 -0.0 +0.1 +0.0 -0.0 +0.6
complex community Community=arabino-guar; Passage=4 +0.0 +0.1 -0.0 +0.8 +0.1
complex community Community=arabino-guar; Passage=4 +0.1 +0.6 -0.1 +1.0 -0.7
complex community Community=Kojac gum; Passage=1 -0.0 +0.3 +0.1 +0.5 +0.1
complex community Community=guar; Passage=4 +0.1 +0.3 +0.4 +0.9 -0.4
complex community Community=guar; Passage=4 +0.4 +0.3 +0.1 +1.1 -0.3
complex community Community=Kojac gum; Passage=4 +0.6 +0.7 +0.4 +0.3 +0.4
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