Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_03060 and PS417_03065 are separated by 72 nucleotidesPS417_03065 and PS417_03070 are separated by 125 nucleotidesPS417_03070 and PS417_03075 overlap by 4 nucleotidesPS417_03075 and PS417_03080 are separated by 10 nucleotides PS417_03060: PS417_03060 - pilus assembly protein TadE, at 705,445 to 705,888 _03060 PS417_03065: PS417_03065 - peptidase A24, at 705,961 to 706,410 _03065 PS417_03070: PS417_03070 - LuxR family transcriptional regulator, at 706,536 to 707,324 _03070 PS417_03075: PS417_03075 - hypothetical protein, at 707,321 to 707,593 _03075 PS417_03080: PS417_03080 - hypothetical protein, at 707,604 to 708,314 _03080
Group Condition PS417_03060 PS417_03065 PS417_03070 PS417_03075 PS417_03080
stress methylglyoxal 0.032 vol% -0.1 -0.2 +0.3 -0.7 -1.2
agar plate interaction control Taped volatile agar plate with no fungus -0.4 -0.4 +0.6 -0.6 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 +0.1 -0.4 -0.0 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.1 -0.4 -0.4 +1.4
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 +0.4 +1.3 -0.2 -1.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.5 +1.1 +0.2 -0.5
soil soil sample 7; outgrowth in LB +0.3 +0.4 +0.7 -0.4 +0.5
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 +0.3 +1.5 +0.1 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.5 +0.3 +1.5 -0.1
soil soil sample 6; outgrowth in LB +0.7 +0.5 +0.8 +0.1 +0.2
phage P. simiae Grant Run MOI 0.1 +0.2 +0.1 +0.7 +0.3 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.5 +0.6 +0.6 +0.4
carbon source Fumarate (C) +0.3 +0.4 +0.4 +0.3 +0.9
rhizosphere rhizosphere sample 8; outgrowth in LB +0.4 +0.3 +1.2 +0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.7 +0.6 +0.3 +0.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.7 +0.7 +0.7 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.3 +0.2 +1.1 +1.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.6 +0.6 +0.8 +1.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.4 +0.8 +0.7 +1.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.5 +0.8 +0.9 +0.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.6 +0.6 +0.6 +1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 +1.0 +0.9 +0.7 +0.2
soil soil sample 5; outgrowth in LB +0.8 +0.3 +1.2 +0.7 +1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.2 +0.7 +0.6 +2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.9 +0.8 +0.8 +1.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.9 +1.4 +1.1 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.0 -0.0 +0.6 +1.3 +1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 +1.0 +0.9 +1.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.9 +0.5 +1.2 +1.7 +1.4
root root sample 6; outgrowth in LB +1.4 +1.0 +2.1 +1.2 +2.4
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