Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6007 and GFF6008 are separated by 193 nucleotidesGFF6008 and GFF6009 are separated by 13 nucleotidesGFF6009 and GFF6010 are separated by 10 nucleotidesGFF6010 and GFF6011 are separated by 6 nucleotides GFF6007 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 65,384 to 67,624 GFF6007 GFF6008 - Citrate synthase (si) (EC 2.3.3.1), at 67,818 to 68,603 GFF6008 GFF6009 - Acyl-CoA dehydrogenase STM0857, at 68,617 to 69,780 GFF6009 GFF6010 - MmgE/PrpD family protein, at 69,791 to 71,152 GFF6010 GFF6011 - putative decarboxylase, at 71,159 to 71,866 GFF6011
Group Condition GFF6007 GFF6008 GFF6009 GFF6010 GFF6011
complex community Community=guar; Passage=4 +0.4 -2.8 +0.3 +0.0 -1.5
complex community Community=arabino-guar; Passage=4 -0.1 -2.6 +0.0 -0.3 +0.8
complex community Community=guar; Passage=4 -0.3 +0.6 -0.6 -1.2 -0.7
complex community Community=Locust bean gum; Passage=4 -0.6 -0.6 +0.4 -1.2 +1.0
complex community Community=Locust bean gum; Passage=4 +0.2 -1.3 +0.2 -0.3 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.4 +0.2 -0.6 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.8 -0.1 -0.1 +0.2
no phage control no phage control -0.1 -0.7 -0.1 +0.0 +0.3
complex community Community=guar; Passage=4 -0.5 +0.3 -0.8 +0.2 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.8 +0.0 +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 +0.5 -0.2 -0.6 -0.1
complex community Community=Kojac gum; Passage=4 -0.1 +0.5 -0.1 +0.1 -0.6
complex community Community=arabino-guar; Passage=4 -0.1 +1.0 -0.6 -0.5 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.3 -0.1 -0.3 -0.2
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.4 +0.2 -0.3 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 -0.6 +0.1 +0.1 +0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.2 +0.2 -0.4 +0.4
phage phage_bap4 +0.4 -0.2 +0.2 -0.3 +0.2
phage phage_bap4 -0.0 -0.3 -0.0 +0.1 +0.6
complex community Community=Locust bean gum; Passage=4 +0.2 +0.2 +0.1 -1.6 +1.5
complex community Community=arabino-guar; Passage=4 +0.2 +0.4 +0.3 +0.6 -1.1
phage phage_bap4 -0.0 +0.1 -0.2 +0.2 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.7 +0.1 -0.1 +0.2
complex community Community=arabino-guar; Passage=4 +0.4 +0.9 -0.2 +1.1 -1.3
complex community Community=Kojac gum; Passage=1 +0.3 +0.8 -0.1 -0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.8 +0.1 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.0 +0.6 +0.2 +0.2 +0.1
complex community Community=Locust bean gum; Passage=1 +0.2 +0.5 +0.2 +0.2 +0.4
complex community Community=Locust bean gum; Passage=4 -0.0 +0.7 -0.2 +0.4 +0.6
complex community Community=guar; Passage=4 +0.3 +0.0 +0.3 +0.5 +0.5
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