Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6004 and GFF6005 are separated by 112 nucleotidesGFF6005 and GFF6006 are separated by 3 nucleotidesGFF6006 and GFF6007 are separated by 41 nucleotidesGFF6007 and GFF6008 are separated by 193 nucleotides GFF6004 - hypothetical protein, at 62,555 to 62,734 GFF6004 GFF6005 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 62,847 to 64,352 GFF6005 GFF6006 - BUG/TctC family periplasmic protein, at 64,356 to 65,342 GFF6006 GFF6007 - Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8), at 65,384 to 67,624 GFF6007 GFF6008 - Citrate synthase (si) (EC 2.3.3.1), at 67,818 to 68,603 GFF6008
Group Condition GFF6004 GFF6005 GFF6006 GFF6007 GFF6008
complex community Community=guar; Passage=4 N.D. +0.1 -0.8 +0.4 -2.8
complex community Community=Locust bean gum; Passage=4 N.D. +0.1 -1.7 -0.6 -0.6
complex community Community=guar; Passage=4 N.D. +0.2 -2.6 +0.3 +0.0
complex community Community=Kojac gum; Passage=4 N.D. -0.1 -2.3 -0.1 +0.5
complex community Community=Locust bean gum; Passage=4 N.D. +0.5 -2.4 +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.0 -0.4 +0.0 -0.7
no phage control no phage control N.D. +0.1 -0.2 -0.1 -0.7
complex community Community=Locust bean gum; Passage=4 N.D. -0.2 +0.4 +0.2 -1.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.1 -0.8 -0.0 -0.1
complex community Community=arabino-guar; Passage=4 N.D. +0.4 -1.8 +0.2 +0.4
vitamin M9 with Supernatant from Cyptococcus N.D. -0.1 +0.3 -0.2 -0.8
phage phage_bap4 N.D. +0.1 -0.8 -0.0 +0.1
phage phage_bap4 N.D. +0.1 -0.8 +0.4 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.1 +0.2 -0.1 -0.8
phage phage_bap4 N.D. +0.3 -0.5 -0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.2 -1.1 +0.0 +0.6
phage phage_bap4 N.D. +0.1 -0.5 +0.3 -0.1
complex community Community=arabino-guar; Passage=4 N.D. +0.5 +2.2 -0.1 -2.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.2 -0.3 +0.1 +0.5
complex community Community=guar; Passage=4 N.D. -0.0 +0.3 -0.5 +0.3
complex community Community=Locust bean gum; Passage=4 N.D. +0.2 -0.6 -0.0 +0.7
vitamin M9 with Supernatant from Cyptococcus N.D. +0.0 +0.5 +0.3 -0.2
phage phage_bap4 N.D. +0.0 +1.1 -0.1 -0.5
complex community Community=guar; Passage=4 N.D. +0.1 +0.6 -0.3 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.2 +0.4 -0.1 +0.7
complex community Community=Kojac gum; Passage=1 N.D. +0.1 +0.0 +0.3 +0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.1 +0.8 +0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.1 +0.4 +0.2 +0.8
complex community Community=arabino-guar; Passage=4 N.D. -0.0 +0.7 -0.1 +1.0
complex community Community=arabino-guar; Passage=4 N.D. -0.0 +0.8 +0.4 +0.9
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