Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5991 and GFF5992 overlap by 13 nucleotidesGFF5992 and GFF5993 are separated by 32 nucleotidesGFF5993 and GFF5994 overlap by 4 nucleotidesGFF5994 and GFF5995 are separated by 121 nucleotides GFF5991 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 47,448 to 48,932 GFF5991 GFF5992 - BUG/TctC family periplasmic protein, at 48,920 to 49,894 GFF5992 GFF5993 - putative membrane protein, at 49,927 to 51,273 GFF5993 GFF5994 - Chlorogenate esterase, at 51,270 to 54,026 GFF5994 GFF5995 - LysR family transcriptional regulator STM3121, at 54,148 to 55,083 GFF5995
Group Condition GFF5991 GFF5992 GFF5993 GFF5994 GFF5995
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.1 +0.2 -0.1 +0.0 -0.7
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.3 -0.0 +0.0 -0.4
phage phage_bap4 +0.0 -0.3 -0.0 +0.1 -0.4
phage phage_bap4 -0.3 +0.1 +0.1 -0.1 -0.2
complex community Community=guar; Passage=4 -0.0 -0.1 -0.4 +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 +0.3 +0.1 +0.1 -0.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 +0.4 +0.1 +0.0 -0.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 +0.2 +0.1 -0.0 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 +0.1 -0.1 -0.0 -0.2
phage phage_bap4 +0.3 -0.2 +0.0 +0.1 -0.2
complex community Community=arabino-guar; Passage=4 +0.0 +0.7 -0.2 -0.0 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 +0.3 -0.0 -0.0 +0.3
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.4 -0.2 +0.1 -0.2
complex community Community=Kojac gum; Passage=1 -0.3 +0.3 -0.1 +0.0 +0.3
vitamin M9 with Supernatant from Cyptococcus +0.2 +0.0 -0.1 -0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 +0.4 -0.2 -0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.4 +0.0 +0.0 -0.3
phage phage_bap4 -0.1 +0.3 +0.1 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 +0.1 -0.2 +0.0 +0.1
complex community Community=arabino-guar; Passage=4 -0.5 +0.2 +0.4 +0.2 +0.3
no phage control no phage control +0.2 -0.0 +0.1 -0.0 +0.5
complex community Community=guar; Passage=4 +0.4 +0.5 -0.0 +0.1 -0.3
complex community Community=Locust bean gum; Passage=4 +0.5 -0.3 -0.3 +0.0 +0.9
complex community Community=Kojac gum; Passage=4 +0.5 -0.5 +0.5 +0.6 -0.3
complex community Community=Locust bean gum; Passage=4 +0.2 -0.4 +0.6 +0.0 +0.5
complex community Community=Locust bean gum; Passage=4 +0.1 +0.1 -0.2 +0.2 +0.9
complex community Community=arabino-guar; Passage=4 +0.7 -0.6 +0.6 -0.1 +0.7
complex community Community=arabino-guar; Passage=4 +0.1 +0.2 +0.3 -0.1 +0.7
complex community Community=guar; Passage=4 -0.5 +0.2 +0.3 +0.4 +1.0
complex community Community=guar; Passage=4 +0.7 +0.6 +0.3 +0.1 +0.2
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