Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03020	PS417_03025	PS417_03030	PS417_03035	PS417_03040
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.1	-0.7	-0.1	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.1	-0.6	-0.4	-0.2
seeds	Growth on radish seeds for 72 hours	N.D.	-0.4	-0.4	+0.1	-0.5
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	N.D.	-0.6	-0.4	+0.0	-0.2
root	root sample 6; outgrowth in LB	N.D.	-0.3	+0.1	-0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	-0.8	+0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.3	+0.0	-0.5
soil	soil sample 8; outgrowth in LB	N.D.	-0.3	+0.4	-0.4	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.5	-0.5	-0.2	-0.3
solid stress	Fraxetin 2 mM; solid stress	N.D.	+0.5	-0.7	-0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-0.4	+0.3	+0.1
phage	Wcs_1	N.D.	-0.3	-0.5	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.6	-0.1	-0.0
soil	soil sample 5; outgrowth in LB	N.D.	-0.5	+0.5	-0.3	-0.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	N.D.	-0.5	+0.5	+0.0	-0.2
seeds	Growth on radish seeds for 72 hours	N.D.	+0.2	+0.4	-0.2	-0.5
phage	P. simiae Grant Run MOI 10	N.D.	+0.3	+0.3	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	+0.7	-0.5	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.5	+0.4	+0.2	-0.1
supernatant control	Vogels_fungal_media 0.1X	N.D.	-0.3	+0.5	-0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.5	+0.3	-0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.4	-0.4	-0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.3	+0.7	+0.0	+0.2
supernatant control	Vogels_fungal_media 0.1X	N.D.	-0.2	+0.9	+0.1	-0.1
phage	JP1 MOI 1	N.D.	-0.2	+0.7	+0.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.1	+0.2	+0.6
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.4	+0.6	-0.1	+0.1
nophagecontrol	TIme6-nophage	N.D.	+0.2	+0.7	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.3	+1.0	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.3	+0.2	+0.6