Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5953 and GFF5954 overlap by 1 nucleotidesGFF5954 and GFF5955 are separated by 58 nucleotidesGFF5955 and GFF5956 are separated by 144 nucleotidesGFF5956 and GFF5957 are separated by 42 nucleotides GFF5953 - Class D beta-lactamase (EC 3.5.2.6), at 8,807 to 9,673 GFF5953 GFF5954 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 9,673 to 10,797 GFF5954 GFF5955 - Transcriptional regulator, LysR family, at 10,856 to 11,773 GFF5955 GFF5956 - FIG01055484: hypothetical protein, at 11,918 to 12,601 GFF5956 GFF5957 - Uncharacterized MFS-type transporter, at 12,644 to 13,969 GFF5957
Group Condition GFF5953 GFF5954 GFF5955 GFF5956 GFF5957
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.3 +0.1 -0.7 -0.0
phage phage_bap4 -0.5 -0.1 +0.4 -0.5 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 -0.1 +0.3 -0.5 -0.1
complex community Community=guar; Passage=4 -0.6 +0.0 -0.6 +0.3 +0.4
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.1 +0.3 -0.7 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.6 +0.5 -0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.5 -0.6 +0.1 -0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 -0.1 +0.4 -0.4 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.5 -0.0 +0.3 -0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.2 -0.6 +0.3 -0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.5 +0.3 +0.0 +0.1
complex community Community=Kojac gum; Passage=4 +0.3 +0.1 -0.3 +0.3 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.3 +0.3 -0.1 +0.3
phage phage_bap4 +0.2 -0.2 +0.4 -0.2 +0.1
complex community Community=guar; Passage=4 +0.5 -0.5 +0.1 -0.2 +0.6
vitamin M9 with Supernatant from Cyptococcus +0.2 -0.2 +0.3 -0.1 +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.3 -0.2 +0.3 +0.2 +0.1
phage phage_bap4 +0.2 +0.1 +0.3 -0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.3 +0.2 +0.1 +0.5 +0.2
phage phage_bap4 -0.1 +0.1 +0.4 +0.4 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 +0.0 +0.3 +0.3 +0.1
phage phage_bap4 +0.2 +0.3 +0.2 +0.3 +0.2
phage phage_bap4 +0.3 +0.1 +0.4 +0.1 +0.4
complex community Community=arabino-guar; Passage=4 +0.1 +0.2 +0.5 +0.6 +0.2
complex community Community=Locust bean gum; Passage=4 +0.3 +0.0 -0.2 +0.4 +1.2
complex community Community=Locust bean gum; Passage=4 +0.9 -0.1 +0.0 +0.3 +0.9
complex community Community=guar; Passage=4 +0.1 +0.5 -0.1 +1.4 +0.4
complex community Community=Locust bean gum; Passage=4 +0.8 +0.2 -0.2 +1.1 +0.9
complex community Community=Locust bean gum; Passage=4 +1.0 -0.4 +0.3 +1.0 +1.2
complex community Community=guar; Passage=4 +0.7 +0.9 -0.2 +1.2 +0.7
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