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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5941 and GFF5942 are separated by 49 nucleotides
GFF5942 and GFF5943 overlap by 4 nucleotides
GFF5943 and GFF5944 are separated by 27 nucleotides
GFF5944 and GFF5945 are separated by 24 nucleotides
GFF5941 - hypothetical protein, at 161,482 to 162,039
GFF5941
GFF5942 - hypothetical protein, at 162,089 to 164,233
GFF5942
GFF5943 - hypothetical protein, at 164,230 to 165,393
GFF5943
GFF5944 - Adenylosuccinate lyase (EC 4.3.2.2), at 165,421 to 166,170
GFF5944
GFF5945 - Membrane-bound lytic murein transglycosylase A, at 166,195 to 167,796
GFF5945
Group
Condition
GFF5941
GFF5942
GFF5943
GFF5944
GFF5945
complex community
Community=arabino-guar; Passage=4
-2.3
-0.3
-1.7
-0.2
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-2.9
-0.0
-0.2
-0.2
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-3.2
-0.0
+0.4
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.3
+0.2
-0.4
-0.8
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.6
-0.7
-0.9
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.9
-0.1
-0.6
-0.4
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.9
-0.2
-0.7
-0.2
+0.1
phage
phage_bap4
-0.8
-0.4
-0.5
-0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.1
-0.1
-0.6
-0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.8
+0.2
-1.1
-0.1
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.0
-0.3
-1.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-1.1
-0.1
-0.5
-0.1
+0.1
complex community
Community=arabino-guar; Passage=4
-3.8
+0.5
+0.8
+0.6
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.1
+0.2
-0.3
-0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.8
+0.1
-0.4
-0.4
+0.1
no phage control
no phage control
-1.0
-0.0
+0.1
-0.5
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.5
-0.2
-1.0
+0.2
+0.2
complex community
Community=guar; Passage=4
+2.2
-0.3
-2.0
-0.6
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.1
+0.3
+0.1
-0.4
+0.1
phage
phage_bap4
-1.0
+0.5
-0.1
-0.2
+0.2
phage
phage_bap4
-1.0
+0.5
+0.1
+0.1
+0.3
complex community
Community=guar; Passage=4
-0.7
+0.4
+0.7
-0.6
+0.2
complex community
Community=guar; Passage=4
+0.7
-0.6
-0.6
+0.4
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.8
+0.7
-1.0
-0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
-0.2
+1.0
+0.1
-0.2
complex community
Community=Kojac gum; Passage=1
+1.0
-0.1
-0.1
-0.3
+0.0
complex community
Community=guar; Passage=4
+2.7
-0.6
-0.4
-0.4
-0.3
complex community
Community=arabino-guar; Passage=4
+1.2
+0.1
-0.2
+0.1
-0.0
complex community
Community=arabino-guar; Passage=4
+2.5
-0.8
-0.5
-0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
+2.7
+0.6
-0.6
+0.4
-0.0
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