Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_03010	PS417_03015	PS417_03020	PS417_03025	PS417_03030
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.4	N.D.	-0.4	-0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.3	N.D.	-0.5	-0.4
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	+0.1	-0.3	N.D.	-0.6	-0.4
phage	P. simiae Grant Run MOI 0.1	+0.2	-0.3	N.D.	-0.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.5	N.D.	-0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.6	N.D.	-0.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.2	N.D.	+0.1	-0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.3	N.D.	-0.4	-0.6
supernatant control	Vogels_fungal_media 0.1X	-0.5	-0.2	N.D.	-0.3	+0.5
soil	soil sample 5; outgrowth in LB	-0.0	-0.3	N.D.	-0.5	+0.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.0	-0.3	N.D.	-0.5	+0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.7	-0.2	N.D.	-0.5	-0.1
phage	JP1 MOI 1	-0.5	-0.0	N.D.	-0.2	+0.7
phage	JP1 MOI 0.1	-0.4	+0.2	N.D.	-0.4	+0.5
solid stress	Fraxetin 2 mM; solid stress	-0.1	+0.2	N.D.	+0.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Phenylalanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.2	N.D.	+0.4	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	+0.3	N.D.	+0.5	-0.5
supernatant control	Vogels_fungal_media 0.1X	-0.4	-0.2	N.D.	-0.2	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.4	N.D.	+0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.2	N.D.	-0.3	+0.7
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.4	-0.1	N.D.	+0.1	+0.7
carbon source	2'-Deoxyinosine 5 mM (C)	-0.0	+0.3	N.D.	+0.6	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.2	N.D.	+0.4	+0.4
solid stress	80% Methanol 2 mM; solid stress	-0.3	+0.5	N.D.	+0.4	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	-0.1	N.D.	+0.4	+0.6
solid stress	Fraxetin 0.5 mM; solid stress	+0.1	+0.4	N.D.	+0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.2	N.D.	+0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	N.D.	+0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	N.D.	+0.2	+0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	+0.4	N.D.	+0.6	+0.4